RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CNKSR2Q8WXI2 1034 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 SHISA4Q96DD7 197 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 CHMP4AQ9BY43 222 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 API5Q9BZZ5 524 aaKnown RBP13.76□□□□□ -0.21
SHMT2-216ENST00000554975 ARAP2Q8WZ64 1704 aa13.76□□□□□ -0.21
SHMT2-216ENST00000554975 ALPK3Q96L96 1907 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 PPP1R12BO60237 982 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-216ENST00000554975 EIF5BO60841 1220 aaKnown RBP13.75□□□□□ -0.21
SHMT2-216ENST00000554975 CCDC30Q5VVM6 783 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 TSPYL6Q8N831 410 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 TTLL11Q8NHH1 800 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 MS4A4AQ96JQ5 239 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 ARHGAP39Q9C0H5 1083 aa13.75□□□□□ -0.21
SHMT2-216ENST00000554975 BSDC1Q9NW68 430 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-216ENST00000554975 CWC25Q9NXE8 425 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-216ENST00000554975 ZNF804BA4D1E1 1349 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 IGHDP01880 384 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 HSP90B1P14625 803 aaKnown RBP13.74□□□□□ -0.21
SHMT2-216ENST00000554975 DLGAP5Q15398 846 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 TWISTNBQ3B726 338 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-216ENST00000554975 OTUD7BQ6GQQ9 843 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 CDAN1Q8IWY9 1227 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 BRI3BPQ8WY22 251 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 CDC5LQ99459 802 aaKnown RBP13.74□□□□□ -0.21
SHMT2-216ENST00000554975 STK31Q9BXU1 1019 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 PRO3102Q9H379 93 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 ELP3Q9H9T3 547 aa13.74□□□□□ -0.21
SHMT2-216ENST00000554975 SNAP23O00161 211 aa13.73□□□□□ -0.21
SHMT2-216ENST00000554975 NBPF11Q86T75 865 aa13.73□□□□□ -0.21
SHMT2-216ENST00000554975 OPTNQ96CV9 577 aa13.73□□□□□ -0.21
SHMT2-216ENST00000554975 PRMT6Q96LA8 375 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-216ENST00000554975 NOB1Q9ULX3 412 aaKnown RBP13.73□□□□□ -0.21
SHMT2-216ENST00000554975 PPP2R3BQ9Y5P8 575 aa13.73□□□□□ -0.21
SHMT2-216ENST00000554975 IRS2Q9Y4H2 1338 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 F8W031 263 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-216ENST00000554975 IREB2P48200 963 aaKnown RBP13.72□□□□□ -0.21
SHMT2-216ENST00000554975 MMP14P50281 582 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 MTFR1Q15390 333 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 TAF1CQ15572 869 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-216ENST00000554975 CFAP100Q494V2 611 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 ANKRD13AQ8IZ07 590 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 FAM43AQ8N2R8 423 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 MTMR14Q8NCE2 650 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 METTL22Q9BUU2 404 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-216ENST00000554975 VEZTQ9HBM0 779 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 LEMD3Q9Y2U8 911 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 PCDHB15Q9Y5E8 787 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 MGAMO43451 1857 aa13.72□□□□□ -0.21
SHMT2-216ENST00000554975 SPDYE2BA6NHP3 402 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 UNCXA6NJT0 531 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 SOX1O00570 391 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-216ENST00000554975 ECM2O94769 699 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-216ENST00000554975 DDX58O95786 925 aaKnown RBP13.71□□□□□ -0.21
SHMT2-216ENST00000554975 IGKV5-2P06315 115 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 SPDYE6P0CI01 402 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 BECN1Q14457 450 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 SMC5Q8IY18 1101 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 DPF3Q92784 378 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 CD209Q9NNX6 404 aa13.71□□□□□ -0.21
SHMT2-216ENST00000554975 CCL15-CCL14A0A0B4J2E2 113 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 CTGFP29279 349 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 RASA3Q14644 834 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 CCL15Q16663 113 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 SUPT20HL1Q3ZLR7 823 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-216ENST00000554975 TMEM57Q8N5G2 664 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 ZBTB40Q9NUA8 1239 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 JAG2Q9Y219 1238 aa13.7□□□□□ -0.22
SHMT2-216ENST00000554975 PTPRCP08575 1304 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 VAMP4O75379 141 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 UBE2Q1Q7Z7E8 422 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 MRPL50Q8N5N7 158 aaKnown RBP13.69□□□□□ -0.22
SHMT2-216ENST00000554975 LRCH3Q96II8 777 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 ZFYVE28Q9HCC9 887 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 MAP3K2Q9Y2U5 619 aa13.69□□□□□ -0.22
SHMT2-216ENST00000554975 UNC80Q8N2C7 3258 aa13.68□□□□□ -0.22
SHMT2-216ENST00000554975 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
SHMT2-216ENST00000554975 LACTBP83111 547 aaPredicted RBP13.68□□□□□ -0.22
SHMT2-216ENST00000554975 CWF19L2Q2TBE0 894 aaKnown RBP13.68□□□□□ -0.22
SHMT2-216ENST00000554975 TEPSINQ96N21 525 aa13.68□□□□□ -0.22
SHMT2-216ENST00000554975 TNNQ9UQP3 1299 aa13.68□□□□□ -0.22
SHMT2-216ENST00000554975 IGHMBP2P38935 993 aaKnown RBP13.67□□□□□ -0.22
SHMT2-216ENST00000554975 CHRNDQ07001 517 aa13.67□□□□□ -0.22
SHMT2-216ENST00000554975 VGLL4Q14135 290 aa13.67□□□□□ -0.22
SHMT2-216ENST00000554975 HELBQ8NG08 1087 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-216ENST00000554975 DOCK3Q8IZD9 2030 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 MYO1BO43795 1136 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 TLR2O60603 784 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 TAF5LO75529 589 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 ITGA6P23229 1130 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 NEXNQ0ZGT2 675 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 G2E3Q7L622 706 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 UBE3BQ7Z3V4 1068 aa13.66□□□□□ -0.22
SHMT2-216ENST00000554975 PI4KAP2A4QPH2 592 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 BTBD19C9JJ37 291 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 ZBTB7BO15156 539 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-216ENST00000554975 GTF2A2P52657 109 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 ARHGEF6Q15052 776 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
SHMT2-216ENST00000554975 KSR2Q6VAB6 950 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms