RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 ARHGEF6Q15052 776 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 LRP10Q7Z4F1 713 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 NGEFQ8N5V2 710 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 DEFB123Q8N688 67 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 TBC1D16Q8TBP0 767 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 WNK4Q96J92 1243 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 PHACTR3Q96KR7 559 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 MTRQ99707 1265 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 PODXL2Q9NZ53 605 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 NSFL1CQ9UNZ2 370 aaKnown RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 SCAF8Q9UPN6 1271 aaKnown RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 PRUNE2Q8WUY3 3088 aa6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 LAMA2P24043 3122 aaKnown RBP6.42□□□□□ -1.38
NPIPB3-211ENST00000542953 COL1A1P02452 1464 aaPredicted RBP6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 ZNF646O15015 1829 aaPredicted RBP6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 SSC5DA1L4H1 1573 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 WNT10BO00744 389 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 BMP8BP34820 402 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 NBPF9Q3BBW0 867 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 OTUD7BQ6GQQ9 843 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 NLRP10Q86W26 655 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 NKX2-3Q8TAU0 364 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 SLC10A4Q96EP9 437 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 PTPN18Q99952 460 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 ZC3H12CQ9C0D7 883 aaKnown RBP6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 RRP7AQ9Y3A4 280 aaKnown RBP6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 KNSTRNQ9Y448 316 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 SH3TC1Q8TE82 1336 aa6.41□□□□□ -1.38
NPIPB3-211ENST00000542953 DPYSL4O14531 572 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 HTATSF1O43719 755 aaKnown RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 GJB1P08034 283 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 GJA5P36382 358 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 GJA8P48165 433 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 MMP14P50281 582 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 EIF4G2P78344 907 aaKnown RBP eCLIP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 SF3B3Q15393 1217 aaKnown RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 TAF7Q15545 349 aaPredicted RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 LRIT3Q3SXY7 679 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 Q7L0L9 218 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 MCM10Q7L590 875 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 APOBEC3FQ8IUX4 373 aaKnown RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 SH3TC2Q8TF17 1288 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 CELF1Q92879 486 aaKnown RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 CLMNQ96JQ2 1002 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 GDF15Q99988 308 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 POLR3GLQ9BT43 218 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 RSPH6AQ9H0K4 717 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 ANGEL1Q9UNK9 670 aaKnown RBP6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 PSME4Q14997 1843 aa6.4□□□□□ -1.38
NPIPB3-211ENST00000542953 COL4A1P02462 1669 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 USP17L3A6NCW0 530 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 USP17L4A6NCW7 530 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 U2SURPO15042 1029 aaKnown RBP6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 GNRH1P01148 92 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 MYL6BP14649 208 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 PRKAR2BP31323 418 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 GGCXP38435 758 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 PRMT2P55345 433 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 EIF4A1P60842 406 aaKnown RBP6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 HSP90AB3PQ58FF7 597 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 USP17L1Q7RTZ2 530 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 RTF1Q92541 710 aaKnown RBP6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 DDX12PQ92771 950 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 ZBED3Q96IU2 234 aaPredicted RBP6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 STAP2Q9UGK3 403 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 TAF1P21675 1872 aa6.39□□□□□ -1.39
NPIPB3-211ENST00000542953 MAP3K7O43318 606 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 UFL1O94874 794 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 MYCP01106 439 aaPredicted RBP6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 LACTBP83111 547 aaPredicted RBP6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 PRKG1Q13976 671 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 PDIA6Q15084 440 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 MTFR1Q15390 333 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 DACT2Q5SW24 774 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 PODNQ7Z5L7 613 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 OGFOD1Q8N543 542 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 ZNF775Q96BV0 537 aaPredicted RBP6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 TRMT112Q9UI30 125 aaKnown RBP6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 GGA1Q9UJY5 639 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 PPP2R3BQ9Y5P8 575 aa6.38□□□□□ -1.39
NPIPB3-211ENST00000542953 RPTORQ8N122 1335 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 MYO3BQ8WXR4 1341 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 PPP1R12BO60237 982 aaPredicted RBP6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 SASH1O94885 1247 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 FARP2O94887 1054 aaPredicted RBP6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 CAPN2P17655 700 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 PLA2G5P39877 138 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 RPS8P62241 208 aaKnown RBP6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 DCTN1Q14203 1278 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 NBR1Q14596 966 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 FAM109BQ6ICB4 259 aaPredicted RBP6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 PNISRQ8TF01 805 aaKnown RBP6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 BRI3BPQ8WY22 251 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 CDCA7LQ96GN5 454 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 TMUB1Q9BVT8 246 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 DEFB129Q9H1M3 183 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 ZFYVE28Q9HCC9 887 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 MIS18AQ9NYP9 233 aa6.37□□□□□ -1.39
NPIPB3-211ENST00000542953 FZD1Q9UP38 647 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms