RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TMEM63CQ9P1W3 806 aa17.17■□□□□ 0.34
CLIP1-216ENST00000541410 COL1A1P02452 1464 aaPredicted RBP17.17■□□□□ 0.34
CLIP1-216ENST00000541410 PRC1O43663 620 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 TM4SF1P30408 202 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 ZSCAN23Q3MJ62 389 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 EPB41L4AQ9HCS5 686 aaPredicted RBP17.16■□□□□ 0.34
CLIP1-216ENST00000541410 RAI14Q9P0K7 980 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 ANTXR2P58335 489 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 UBE4AQ14139 1066 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 RALYLQ86SE5 291 aaKnown RBP17.16■□□□□ 0.34
CLIP1-216ENST00000541410 TXNRD3Q86VQ6 643 aa17.16■□□□□ 0.34
CLIP1-216ENST00000541410 CTDNEP1O95476 244 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 CTDSPL2Q05D32 466 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 CAVIN4Q5BKX8 364 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 CNBD1Q8NA66 436 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 PDIA3P30101 505 aaKnown RBP17.15■□□□□ 0.34
CLIP1-216ENST00000541410 L1TD1Q5T7N2 865 aaKnown RBP17.15■□□□□ 0.34
CLIP1-216ENST00000541410 MB21D2Q8IYB1 491 aaPredicted RBP17.15■□□□□ 0.34
CLIP1-216ENST00000541410 NCOA7Q8NI08 942 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 GRPEL1Q9HAV7 217 aa17.15■□□□□ 0.34
CLIP1-216ENST00000541410 UBR3Q6ZT12 1888 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 B4E1Z4 1266 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 PFKFB2O60825 505 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 CYP7A1P22680 504 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 IFNL3Q8IZI9 196 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 AGXT2Q9BYV1 514 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 TAOK2Q9UL54 1235 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 ZNF804BA4D1E1 1349 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 GYS1P13807 737 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 CYB5R4Q7L1T6 521 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 GPR101Q96P66 508 aaPredicted RBP17.14■□□□□ 0.33
CLIP1-216ENST00000541410 NAPBQ9H115 298 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 SLC4A4Q9Y6R1 1079 aa17.14■□□□□ 0.33
CLIP1-216ENST00000541410 CARMIL3Q8ND23 1372 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 MCM5P33992 734 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 CHAF1AQ13111 956 aaPredicted RBP17.13■□□□□ 0.33
CLIP1-216ENST00000541410 PROM2Q8N271 834 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 NSUN7Q8NE18 718 aaKnown RBP17.13■□□□□ 0.33
CLIP1-216ENST00000541410 SDR42E1Q8WUS8 393 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 GNL3LQ9NVN8 582 aaKnown RBP17.13■□□□□ 0.33
CLIP1-216ENST00000541410 NEDD4P46934 1319 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 SYCE3A1L190 88 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 PTPDC1A2A3K4 754 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 GSG1L2A8MUP6 293 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 SMIM22K7EJ46 135 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 PRR5LQ6MZQ0 368 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 FAM184AQ8NB25 1140 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 SENP2Q9HC62 589 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 TACC3Q9Y6A5 838 aa17.13■□□□□ 0.33
CLIP1-216ENST00000541410 KLF18A0A0U1RQI7 1052 aa17.12■□□□□ 0.33
CLIP1-216ENST00000541410 PATL2C9JE40 543 aaKnown RBP17.12■□□□□ 0.33
CLIP1-216ENST00000541410 RGL2O15211 777 aa17.12■□□□□ 0.33
CLIP1-216ENST00000541410 RXRAP19793 462 aa17.12■□□□□ 0.33
CLIP1-216ENST00000541410 ANKIB1Q9P2G1 1089 aa17.12■□□□□ 0.33
CLIP1-216ENST00000541410 TFIP11Q9UBB9 837 aaKnown RBP17.12■□□□□ 0.33
CLIP1-216ENST00000541410 PDCP20941 246 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 GUCY1B3Q02153 619 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 TRDNQ13061 729 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 MYH13Q9UKX3 1938 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 TDO2P48775 406 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 DYNLL1P63167 89 aaKnown RBP17.11■□□□□ 0.33
CLIP1-216ENST00000541410 TXNRD1Q16881 649 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 RRP12Q5JTH9 1297 aaKnown RBP17.11■□□□□ 0.33
CLIP1-216ENST00000541410 TOMM22Q9NS69 142 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 ATP6V1DQ9Y5K8 247 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 CHD4Q14839 1912 aa17.11■□□□□ 0.33
CLIP1-216ENST00000541410 H3BQV1 296 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 IFFO2Q5TF58 517 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 ZNF384Q8TF68 577 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 BAZ2AQ9UIF9 1905 aaKnown RBP17.1■□□□□ 0.33
CLIP1-216ENST00000541410 GOLGA8BA8MQT2 603 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 KDM4AO75164 1064 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 SERPINB2P05120 415 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 HIBADHP31937 336 aaKnown RBP17.1■□□□□ 0.33
CLIP1-216ENST00000541410 MRE11P49959 708 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 FBXO33Q7Z6M2 555 aa17.1■□□□□ 0.33
CLIP1-216ENST00000541410 MBD3O95983 291 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 CCDC144CPQ8IYA2 1237 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 SMARCC2Q8TAQ2 1214 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 ZNF274Q96GC6 653 aaPredicted RBP17.09■□□□□ 0.33
CLIP1-216ENST00000541410 PRDX5P30044 214 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 ZKSCAN3Q9BRR0 538 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 HPS5Q9UPZ3 1129 aa17.09■□□□□ 0.33
CLIP1-216ENST00000541410 MAGEB6P1A0A0J9YX57 407 aa17.08■□□□□ 0.33
CLIP1-216ENST00000541410 MINDY4BA8MYZ0 360 aa17.08■□□□□ 0.33
CLIP1-216ENST00000541410 MYL10Q9BUA6 226 aa17.08■□□□□ 0.33
CLIP1-216ENST00000541410 ANKRD2Q9GZV1 360 aa17.08■□□□□ 0.33
CLIP1-216ENST00000541410 CACNA1SQ13698 1873 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 CYP2D7A0A087X1C5 515 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 ADRA2BP18089 450 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 DDR1Q08345 913 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 GRAPQ13588 217 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 SLC27A3Q5K4L6 730 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 OTUD7BQ6GQQ9 843 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 GRAPLQ8TC17 118 aaPredicted RBP17.08■□□□□ 0.32
CLIP1-216ENST00000541410 RPGRQ92834 1020 aaKnown RBP17.08■□□□□ 0.32
CLIP1-216ENST00000541410 GJB4Q9NTQ9 266 aa17.08■□□□□ 0.32
CLIP1-216ENST00000541410 CEBPZQ03701 1054 aaKnown RBP17.07■□□□□ 0.32
CLIP1-216ENST00000541410 NAA16Q6N069 864 aaPredicted RBP17.07■□□□□ 0.32
CLIP1-216ENST00000541410 TTC6Q86TZ1 520 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms