RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 MINPP1Q9UNW1 487 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 TNRC6CQ9HCJ0 1690 aaKnown RBP11.4□□□□□ -0.58
CLIP1-212ENST00000540304 ZNF804BA4D1E1 1349 aa11.4□□□□□ -0.58
CLIP1-212ENST00000540304 BRF1Q92994 677 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 GTF3C6Q969F1 213 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 AGXT2Q9BYV1 514 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-212ENST00000540304 TCHHQ07283 1943 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 F13A1P00488 732 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 RPS8P62241 208 aaKnown RBP11.39□□□□□ -0.59
CLIP1-212ENST00000540304 DMTNQ08495 405 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 STK3Q13188 491 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 SLC27A3Q5K4L6 730 aa11.39□□□□□ -0.59
CLIP1-212ENST00000540304 L1TD1Q5T7N2 865 aaKnown RBP11.39□□□□□ -0.59
CLIP1-212ENST00000540304 UTP14CQ5TAP6 766 aaKnown RBP11.39□□□□□ -0.59
CLIP1-212ENST00000540304 GNL3LQ9NVN8 582 aaKnown RBP11.39□□□□□ -0.59
CLIP1-212ENST00000540304 FSD2A1L4K1 749 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 GOLGA6L3A6NEY3 463 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 ZNF213O14771 459 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 NPHP1O15259 732 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 PDCP20941 246 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 HAND2P61296 217 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 MAGEB6Q8N7X4 407 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 AIDAQ96BJ3 306 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 LRRC2Q9BYS8 371 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 MTMR6Q9Y217 621 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 ATP6V1DQ9Y5K8 247 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 NFIXQ14938 502 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 CAVIN4Q5BKX8 364 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 FBXL16Q8N461 479 aa11.38□□□□□ -0.59
CLIP1-212ENST00000540304 ISY1Q9ULR0 285 aaKnown RBP11.38□□□□□ -0.59
CLIP1-212ENST00000540304 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.37□□□□□ -0.59
CLIP1-212ENST00000540304 GYG1P46976 350 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 LARP1BQ659C4 914 aaKnown RBP11.37□□□□□ -0.59
CLIP1-212ENST00000540304 STRBPQ96SI9 672 aaKnown RBP11.37□□□□□ -0.59
CLIP1-212ENST00000540304 ANKRD2Q9GZV1 360 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 MYH13Q9UKX3 1938 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 PFKFB2O60825 505 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 APPP05067 770 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 CCDC24Q8N4L8 307 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 NCOA7Q8NI08 942 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 GDPD2Q9HCC8 539 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 ZMYM6O95789 1325 aa11.37□□□□□ -0.59
CLIP1-212ENST00000540304 TRIM37O94972 964 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 MBD3O95983 291 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 CNBD1Q8NA66 436 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 LLPHQ9BRT6 129 aaKnown RBP11.36□□□□□ -0.59
CLIP1-212ENST00000540304 LRP2BPQ9P2M1 347 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 COL1A1P02452 1464 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-212ENST00000540304 WDR19Q8NEZ3 1342 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 VPS37CA5D8V6 355 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-212ENST00000540304 MBD4O95243 580 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 TM4SF1P30408 202 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 MCM5P33992 734 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 APOBRQ0VD83 1088 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 SCRN1Q12765 414 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 ALX1Q15699 326 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 RALYLQ86SE5 291 aaKnown RBP11.36□□□□□ -0.59
CLIP1-212ENST00000540304 VPS37DQ86XT2 251 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 MB21D2Q8IYB1 491 aaPredicted RBP11.36□□□□□ -0.59
CLIP1-212ENST00000540304 TMEM87AQ8NBN3 555 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 GPT2Q8TD30 523 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 CHD4Q14839 1912 aa11.36□□□□□ -0.59
CLIP1-212ENST00000540304 PNPLA7Q6ZV29 1317 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 SEMA3EO15041 775 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 HMGB2P26583 209 aaKnown RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 MMP14P50281 582 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 CHST3Q7LGC8 479 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 ZNF274Q96GC6 653 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 DENND2AQ9ULE3 1009 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 IQSEC3Q9UPP2 1182 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 WTIPA6NIX2 430 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 GNAT2P19087 354 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 EVCP57679 992 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 TRDNQ13061 729 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 GRIPAP1Q4V328 841 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 CAVIN1Q6NZI2 390 aaKnown RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 CHMP4CQ96CF2 233 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 FAM84BQ96KN1 310 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 NBPF3Q9H094 633 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 NSFL1CQ9UNZ2 370 aaKnown RBP11.35□□□□□ -0.59
CLIP1-212ENST00000540304 TIAM2Q8IVF5 1701 aa11.35□□□□□ -0.59
CLIP1-212ENST00000540304 PRC1O43663 620 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 JAK2O60674 1132 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 GYS1P13807 737 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 FBXO33Q7Z6M2 555 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 SMARCC2Q8TAQ2 1214 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 PANK2Q9BZ23 570 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 ARMT1Q9H993 441 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 RBM27Q9P2N5 1060 aaKnown RBP11.34□□□□□ -0.59
CLIP1-212ENST00000540304 CACNA1SQ13698 1873 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 PDS5AQ29RF7 1337 aaKnown RBP11.34□□□□□ -0.59
CLIP1-212ENST00000540304 PPFIA3O75145 1194 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 DNTTIP2Q5QJE6 756 aaKnown RBP11.34□□□□□ -0.59
CLIP1-212ENST00000540304 CDC37L1Q7L3B6 337 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 USP48Q86UV5 1035 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 TBC1D10CQ8IV04 446 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 ZNF592Q92610 1267 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 ARID3AQ99856 593 aa11.34□□□□□ -0.59
CLIP1-212ENST00000540304 NAPBQ9H115 298 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms