RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TMEM131LA2VDJ0 1609 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 UGGT1Q9NYU2 1555 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 CES1P23141 567 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 TBC1D8BQ0IIM8 1120 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 PCSK7Q16549 785 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 FAM182BQ5T319 152 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 EXOC6Q8TAG9 804 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 SPACA7Q96KW9 195 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 GSX2Q9BZM3 304 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 IGFLR1Q9H665 355 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 NDFIP2Q9NV92 336 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 NLRP2Q9NX02 1062 aa8.37□□□□□ -1.07
USP28-202ENST00000535607 TNRQ92752 1358 aa8.36□□□□□ -1.07
USP28-202ENST00000535607 EIF1AYO14602 144 aaKnown RBP8.36□□□□□ -1.07
USP28-202ENST00000535607 THBS1P07996 1170 aa8.36□□□□□ -1.07
USP28-202ENST00000535607 MLECQ14165 292 aa8.36□□□□□ -1.07
USP28-202ENST00000535607 FRAT1Q92837 279 aaPredicted RBP8.36□□□□□ -1.07
USP28-202ENST00000535607 LAMC1P11047 1609 aa8.36□□□□□ -1.07
USP28-202ENST00000535607 EIF3AQ14152 1382 aaKnown RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 CEP170BQ9Y4F5 1589 aaPredicted RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 UBR1Q8IWV7 1749 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 PTPRMP28827 1452 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 RBM47A0AV96 593 aaKnown RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 LCE2BO14633 110 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 PRPF40AO75400 957 aaKnown RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 TARSP26639 723 aaKnown RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 MAP2K3P46734 347 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 PLAURQ03405 335 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 ORC1Q13415 861 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 UBAP2LQ14157 1087 aaKnown RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 DSC3Q14574 896 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 RAB44Q7Z6P3 723 aaPredicted RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 FBF1Q8TES7 1133 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 IRF7Q92985 503 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 RBSNQ9H1K0 784 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 STRN4Q9NRL3 753 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 TMEM63CQ9P1W3 806 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 FOXD3Q9UJU5 478 aaPredicted RBP8.35□□□□□ -1.07
USP28-202ENST00000535607 UHRF1BP1Q6BDS2 1440 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 PPLO60437 1756 aa8.35□□□□□ -1.07
USP28-202ENST00000535607 A2ML1A8K2U0 1454 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 E9PSI1 815 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 EDN3P14138 238 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 ENOX2Q16206 610 aaKnown RBP8.34□□□□□ -1.07
USP28-202ENST00000535607 NCAPG2Q86XI2 1143 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 UBE2OQ9C0C9 1292 aaKnown RBP8.34□□□□□ -1.07
USP28-202ENST00000535607 MBIPQ9NS73 344 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 SPG7Q9UQ90 795 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 KIAA1210Q9ULL0 1709 aa8.34□□□□□ -1.07
USP28-202ENST00000535607 NEXMIFQ5QGS0 1516 aa8.34□□□□□ -1.08
USP28-202ENST00000535607 RPGRIP1LQ68CZ1 1315 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 RALGAPBQ86X10 1494 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 NRXN1Q9ULB1 1477 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 H3BM21 787 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 RRP9O43818 475 aaKnown RBP8.33□□□□□ -1.08
USP28-202ENST00000535607 ZFYVE9O95405 1425 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 ZNF16P17020 682 aaPredicted RBP8.33□□□□□ -1.08
USP28-202ENST00000535607 CTBSQ01459 385 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 HYAL2Q12891 473 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 PKNOX2Q96KN3 472 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 SLC30A3Q99726 388 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 POLR3GLQ9BT43 218 aa8.33□□□□□ -1.08
USP28-202ENST00000535607 UPF2Q9HAU5 1272 aaKnown RBP8.33□□□□□ -1.08
USP28-202ENST00000535607 TERTO14746 1132 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 MMP20O60882 483 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 GADD45BO75293 160 aaPredicted RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 MAP3K6O95382 1288 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 HSP90AA1P07900 732 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 GRNP28799 593 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 PSMD2Q13200 908 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 NBPF8Q3BBV2 869 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 DHX32Q7L7V1 743 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 SYT9Q86SS6 491 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 C1orf127Q8N9H9 656 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 FRMD6Q96NE9 622 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 ZFYVE28Q9HCC9 887 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 AVENQ9NQS1 362 aaPredicted RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 TLR7Q9NYK1 1049 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 ISY1Q9ULR0 285 aaKnown RBP8.32□□□□□ -1.08
USP28-202ENST00000535607 SLIT1O75093 1534 aa8.32□□□□□ -1.08
USP28-202ENST00000535607 VIRMAQ69YN4 1812 aaKnown RBP8.31□□□□□ -1.08
USP28-202ENST00000535607 PRAG1Q86YV5 1406 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 FAM177BA6PVY3 158 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 GHRHP01286 108 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 ADH6P28332 368 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 SOX18P35713 384 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 ZNF468Q5VIY5 522 aaPredicted RBP8.31□□□□□ -1.08
USP28-202ENST00000535607 FBXO33Q7Z6M2 555 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 MICALL1Q8N3F8 863 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 OR13H1Q8NG92 308 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 TRPM1Q7Z4N2 1603 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 SETD1BQ9UPS6 1966 aaKnown RBP8.31□□□□□ -1.08
USP28-202ENST00000535607 ARHGAP23Q9P227 1491 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 MYO5BQ9ULV0 1848 aa8.31□□□□□ -1.08
USP28-202ENST00000535607 PIK3C2GO75747 1445 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 IGHA2P01877 340 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 ALAS2P22557 587 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 CCDC74AQ96AQ1 378 aa8.3□□□□□ -1.08
USP28-202ENST00000535607 DUSP9Q99956 384 aaKnown RBP8.3□□□□□ -1.08
USP28-202ENST00000535607 PNNQ9H307 717 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 146.1 ms