RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 DTNBO60941 627 aa24.51■■□□□ 1.51
VPS28-209ENST00000528142 APPP05067 770 aa24.51■■□□□ 1.51
VPS28-209ENST00000528142 ZSCAN22P10073 491 aaPredicted RBP24.51■■□□□ 1.51
VPS28-209ENST00000528142 STK3Q13188 491 aa24.51■■□□□ 1.51
VPS28-209ENST00000528142 RPGRQ92834 1020 aaKnown RBP24.51■■□□□ 1.51
VPS28-209ENST00000528142 ABCF2Q9UG63 623 aa24.51■■□□□ 1.51
VPS28-209ENST00000528142 KLRG2A4D1S0 409 aaPredicted RBP24.5■■□□□ 1.51
VPS28-209ENST00000528142 FGD1P98174 961 aa24.5■■□□□ 1.51
VPS28-209ENST00000528142 SLC51AQ86UW1 340 aa24.5■■□□□ 1.51
VPS28-209ENST00000528142 TXNRD3Q86VQ6 643 aa24.5■■□□□ 1.51
VPS28-209ENST00000528142 PDGFDQ9GZP0 370 aaPredicted RBP24.5■■□□□ 1.51
VPS28-209ENST00000528142 EPB41L4AQ9HCS5 686 aaPredicted RBP24.5■■□□□ 1.51
VPS28-209ENST00000528142 LEMD3Q9Y2U8 911 aa24.5■■□□□ 1.51
VPS28-209ENST00000528142 GSG1L2A8MUP6 293 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 PFKFB2O60825 505 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 CHST3Q7LGC8 479 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 IFNL3Q8IZI9 196 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 LCORLQ8N3X6 602 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 NCOA7Q8NI08 942 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 GNAT2P19087 354 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 CYP7A1P22680 504 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 HOXA10P31260 410 aaPredicted RBP24.49■■□□□ 1.51
VPS28-209ENST00000528142 EVCP57679 992 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 ADGRA1Q86SQ6 560 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 RAI14Q9P0K7 980 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 QSER1Q2KHR3 1735 aa24.49■■□□□ 1.51
VPS28-209ENST00000528142 APOBRQ0VD83 1088 aa24.48■■□□□ 1.51
VPS28-209ENST00000528142 TBC1D10CQ8IV04 446 aa24.48■■□□□ 1.51
VPS28-209ENST00000528142 FLAD1Q8NFF5 587 aa24.48■■□□□ 1.51
VPS28-209ENST00000528142 RBM17Q96I25 401 aaKnown RBP24.48■■□□□ 1.51
VPS28-209ENST00000528142 MTMR6Q9Y217 621 aa24.48■■□□□ 1.51
VPS28-209ENST00000528142 WDR19Q8NEZ3 1342 aa24.48■■□□□ 1.51
VPS28-209ENST00000528142 PDIA4P13667 645 aaKnown RBP24.47■■□□□ 1.51
VPS28-209ENST00000528142 MCM5P33992 734 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 ANTXR2P58335 489 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 SCRN1Q12765 414 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 STK32BQ9NY57 414 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 ANKIB1Q9P2G1 1089 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 XDHP47989 1333 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 PRKAB2O43741 272 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 MSL1Q68DK7 614 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 NLGN1Q8N2Q7 840 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 MIGA1Q8NAN2 632 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 ZNF384Q8TF68 577 aa24.47■■□□□ 1.51
VPS28-209ENST00000528142 ZNF274Q96GC6 653 aaPredicted RBP24.47■■□□□ 1.51
VPS28-209ENST00000528142 PRC1O43663 620 aa24.46■■□□□ 1.51
VPS28-209ENST00000528142 C15orf52Q6ZUT6 534 aaKnown RBP24.46■■□□□ 1.51
VPS28-209ENST00000528142 GZF1Q9H116 711 aaPredicted RBP24.46■■□□□ 1.51
VPS28-209ENST00000528142 SLC4A4Q9Y6R1 1079 aa24.46■■□□□ 1.51
VPS28-209ENST00000528142 PRPF40AO75400 957 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 F13A1P00488 732 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 KLHL40Q2TBA0 621 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 RALYLQ86SE5 291 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 NAPBQ9H115 298 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 NRXN2Q9P2S2 1712 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 BBOX1O75936 387 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 PDIA3P30101 505 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 LARP1BQ659C4 914 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 CRAMP1Q96RY5 1269 aa24.45■■□□□ 1.5
VPS28-209ENST00000528142 RIOK1Q9BRS2 568 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 LLPHQ9BRT6 129 aaKnown RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 GPHNQ9NQX3 736 aaPredicted RBP24.45■■□□□ 1.5
VPS28-209ENST00000528142 PDCP20941 246 aa24.44■■□□□ 1.5
VPS28-209ENST00000528142 GPSM2P81274 684 aa24.44■■□□□ 1.5
VPS28-209ENST00000528142 CCDC125Q86Z20 511 aa24.44■■□□□ 1.5
VPS28-209ENST00000528142 CACNA1SQ13698 1873 aa24.44■■□□□ 1.5
VPS28-209ENST00000528142 MAGEB6P1A0A0J9YX57 407 aa24.43■■□□□ 1.5
VPS28-209ENST00000528142 JAK2O60674 1132 aa24.43■■□□□ 1.5
VPS28-209ENST00000528142 SMARCC2Q8TAQ2 1214 aa24.43■■□□□ 1.5
VPS28-209ENST00000528142 NKX2-3Q8TAU0 364 aa24.43■■□□□ 1.5
VPS28-209ENST00000528142 NSUN4Q96CB9 384 aaKnown RBP24.43■■□□□ 1.5
VPS28-209ENST00000528142 NACAP1Q9BZK3 213 aa24.43■■□□□ 1.5
VPS28-209ENST00000528142 DDX49Q9Y6V7 483 aaKnown RBP24.43■■□□□ 1.5
VPS28-209ENST00000528142 TRDNQ13061 729 aa24.42■■□□□ 1.5
VPS28-209ENST00000528142 NAA16Q6N069 864 aaPredicted RBP24.42■■□□□ 1.5
VPS28-209ENST00000528142 TDRD7Q8NHU6 1098 aaKnown RBP24.42■■□□□ 1.5
VPS28-209ENST00000528142 ANKRD31Q8N7Z5 1873 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 CTDNEP1O95476 244 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 MMP10P09238 476 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 MECOMQ03112 1051 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 BRIP1Q9BX63 1249 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 TACC3Q9Y6A5 838 aa24.41■■□□□ 1.5
VPS28-209ENST00000528142 NEDD4P46934 1319 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 ATP2B4P23634 1241 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 CHAF1AQ13111 956 aaPredicted RBP24.4■■□□□ 1.5
VPS28-209ENST00000528142 TMED8Q6PL24 325 aaPredicted RBP24.4■■□□□ 1.5
VPS28-209ENST00000528142 CYB5R4Q7L1T6 521 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 NSUN7Q8NE18 718 aaKnown RBP24.4■■□□□ 1.5
VPS28-209ENST00000528142 BRPF3Q9ULD4 1205 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 ATP6V1DQ9Y5K8 247 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 SALL1Q9NSC2 1324 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 TDO2P48775 406 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 UPF1Q92900 1129 aaKnown RBP eCLIP24.4■■□□□ 1.5
VPS28-209ENST00000528142 PODXL2Q9NZ53 605 aa24.4■■□□□ 1.5
VPS28-209ENST00000528142 NSFL1CQ9UNZ2 370 aaKnown RBP24.4■■□□□ 1.5
VPS28-209ENST00000528142 VPS37CA5D8V6 355 aaPredicted RBP24.39■■□□□ 1.49
VPS28-209ENST00000528142 PRDX5P30044 214 aa24.39■■□□□ 1.49
VPS28-209ENST00000528142 CCT2P78371 535 aaKnown RBP24.39■■□□□ 1.49
VPS28-209ENST00000528142 CTDSPL2Q05D32 466 aa24.39■■□□□ 1.49
VPS28-209ENST00000528142 FOXD4L6Q3SYB3 417 aaPredicted RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms