RNA–Protein interactions for RNA: ENST00000521387.1

CTNNA1-227, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 871 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-227ENST00000521387 HCN4Q9Y3Q4 1203 aa9.73□□□□□ -0.85
CTNNA1-227ENST00000521387 PSME4Q14997 1843 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 MRE11P49959 708 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 PRKCZQ05513 592 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 NBPF12Q5TAG4 269 aaPredicted RBP9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 APOBEC3FQ8IUX4 373 aaKnown RBP9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 UHRF1Q96T88 793 aaPredicted RBP9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 EPHX3Q9H6B9 360 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 GABRQQ9UN88 632 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 FAM205AQ6ZU69 1335 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 MYPNQ86TC9 1320 aa9.72□□□□□ -0.85
CTNNA1-227ENST00000521387 USP17L3A6NCW0 530 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 USP17L4A6NCW7 530 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 PPP1R12BO60237 982 aaPredicted RBP9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 DACT2Q5SW24 774 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 USP17L1Q7RTZ2 530 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 NECAB3Q96P71 396 aaPredicted RBP9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 ASB2Q96Q27 587 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 PODXL2Q9NZ53 605 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 CPA4Q9UI42 421 aa9.71□□□□□ -0.86
CTNNA1-227ENST00000521387 BTBD19C9JJ37 291 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 INHAP05111 366 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 HSPA5P11021 654 aaKnown RBP9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 ELNP15502 786 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 CDCA8Q53HL2 280 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 KIF6Q6ZMV9 814 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 LRP10Q7Z4F1 713 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 ANKRD13AQ8IZ07 590 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 RRP7AQ9Y3A4 280 aaKnown RBP9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 CACNA1GO43497 2377 aa9.7□□□□□ -0.86
CTNNA1-227ENST00000521387 FMNL1O95466 1100 aaPredicted RBP9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 CAPN2P17655 700 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 HOXD10P28358 340 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 GTF2A2P52657 109 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 AOX1Q06278 1338 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 PODNQ7Z5L7 613 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 NLRP10Q86W26 655 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 ATXN2LQ8WWM7 1075 aaKnown RBP9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 ADGRA2Q96PE1 1338 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 C11orf16Q9NQ32 467 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 PCDHAC2Q9Y5I4 1007 aa9.69□□□□□ -0.86
CTNNA1-227ENST00000521387 COL1A1P02452 1464 aaPredicted RBP9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 PFASO15067 1338 aa9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 UFL1O94874 794 aa9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 MYL6BP14649 208 aa9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 IREB2P48200 963 aaKnown RBP9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 SF3B3Q15393 1217 aaKnown RBP9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 GAS2L2Q8NHY3 880 aa9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 ZNF428Q96B54 188 aa9.68□□□□□ -0.86
CTNNA1-227ENST00000521387 OTOFQ9HC10 1997 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 G3V3G9 751 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 ADCY3O60266 1144 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 MORC1Q86VD1 984 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 OGFOD1Q8N543 542 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 ANKLE1Q8NAG6 615 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 HELBQ8NG08 1087 aaPredicted RBP9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 NBPF3Q9H094 633 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 GTF3C3Q9Y5Q9 886 aa9.67□□□□□ -0.86
CTNNA1-227ENST00000521387 RPS8P62241 208 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 GRIN2CQ14957 1233 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 SHHQ15465 462 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 SUPT20HL1Q3ZLR7 823 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 PHACTR3Q96KR7 559 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 C11orf49Q9H6J7 331 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 ZCCHC17Q9NP64 241 aaKnown RBP9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 MIS18AQ9NYP9 233 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 GGA1Q9UJY5 639 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 DNAH12Q6ZR08 3092 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 XIRP2A4UGR9 3374 aa9.66□□□□□ -0.86
CTNNA1-227ENST00000521387 ZNF804BA4D1E1 1349 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 SH3TC1Q8TE82 1336 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 HOXB3P14651 431 aaPredicted RBP9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 FLT3LGP49771 235 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 EIF4G2P78344 907 aaKnown RBP eCLIP9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 GOLGA2Q08379 1002 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 VGLL4Q14135 290 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 C9orf50Q5SZB4 431 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 PXYLP1Q8TE99 480 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 THUMPD2Q9BTF0 503 aaKnown RBP9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 TRMT112Q9UI30 125 aaKnown RBP9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 PPP2R3BQ9Y5P8 575 aa9.65□□□□□ -0.86
CTNNA1-227ENST00000521387 MRPS5P82675 430 aaKnown RBP9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 SMAD3P84022 425 aaKnown RBP9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 PDIA6Q15084 440 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 LRRC26Q2I0M4 334 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 TMEM31Q5JXX7 168 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 MCM10Q7L590 875 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 KIAA0825Q8IV33 1275 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 TCF20Q9UGU0 1960 aaKnown RBP9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 ZDBF2Q9HCK1 2354 aa9.64□□□□□ -0.87
CTNNA1-227ENST00000521387 CFAP54Q96N23 3096 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 DDX60LQ5H9U9 1706 aaKnown RBP9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 CLRN2A0PK11 232 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 BCRP11274 1271 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 CETPP11597 493 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 COL6A1P12109 1028 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 BMP1P13497 986 aa9.63□□□□□ -0.87
CTNNA1-227ENST00000521387 DCTN1Q14203 1278 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms