RNA–Protein interactions for RNA: ENST00000511439.5

TOPBP1-208, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 5

Gene TOPBP1, Length 1,142 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-208ENST00000511439 COL17A1Q9UMD9 1497 aaPredicted RBP6.34□□□□□ -1.4
TOPBP1-208ENST00000511439 A6NHS1 94 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 PAX4O43316 350 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 ABL1P00519 1130 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 ACPPP15309 386 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 PREPP48147 710 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 IRAK1P51617 712 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 FKBP4Q02790 459 aaKnown RBP eCLIP6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 TRIM26Q12899 539 aaPredicted RBP6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 NUTM2GQ5VZR2 741 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 ZKSCAN3Q9BRR0 538 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 BHLHE41Q9C0J9 482 aaPredicted RBP6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 AMOTL2Q9Y2J4 779 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 MAPKBP1O60336 1514 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 TOPBP1Q92547 1522 aa6.33□□□□□ -1.4
TOPBP1-208ENST00000511439 MROH2BQ7Z745 1585 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 KRTAP9-6A0A140TA67 174 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 ZBTB7CA1YPR0 619 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 EREGO14944 169 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 ICMTO60725 284 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 ZNF211Q13398 564 aaPredicted RBP6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 MTMR3Q13615 1198 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 CPSF6Q16630 551 aaKnown RBP eCLIP6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 HHIPQ96QV1 700 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 SUGCTQ9HAC7 445 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 ANO2Q9NQ90 1003 aa6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 MAGI1Q96QZ7 1491 aaPredicted RBP6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 TARBP1Q13395 1621 aaKnown RBP6.32□□□□□ -1.4
TOPBP1-208ENST00000511439 SOWAHDA6NJG2 315 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 SOX1O00570 391 aaPredicted RBP6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 TRPA1O75762 1119 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 MED26O95402 600 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 GP2P55259 537 aaKnown RBP6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 ECM1Q16610 540 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 VN1R5Q7Z5H4 357 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 DTX1Q86Y01 620 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 SMG8Q8ND04 991 aaKnown RBP6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 SHKBP1Q8TBC3 707 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 ASAP3Q8TDY4 903 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 USP26Q9BXU7 913 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 TMPRSS13Q9BYE2 586 aa6.31□□□□□ -1.4
TOPBP1-208ENST00000511439 PRR19A6NJB7 356 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 H3BRB1 525 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 SPINK2P20155 84 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 MAP4P27816 1152 aaKnown RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 EXOSC6Q5RKV6 272 aaKnown RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 HP1BP3Q5SSJ5 553 aaPredicted RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 GJD3Q8N144 294 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 C12orf50Q8NA57 414 aaPredicted RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 YIPF2Q9BWQ6 316 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 TUT1Q9H6E5 874 aaKnown RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 ZFYVE1Q9HBF4 777 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 FOXD3Q9UJU5 478 aaPredicted RBP6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 ABCC8Q09428 1581 aa6.3□□□□□ -1.4
TOPBP1-208ENST00000511439 LOC100289279A0A1B0GTE1 492 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 FZD6O60353 706 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 PCF11O94913 1555 aaKnown RBP6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 WNT11O96014 354 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 NEFLP07196 543 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 ESRRAP11474 423 aaPredicted RBP6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 RXRBP28702 533 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 GLYCTKQ8IVS8 523 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 GZF1Q9H116 711 aaPredicted RBP6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 ATG3Q9NT62 314 aa6.29□□□□□ -1.4
TOPBP1-208ENST00000511439 TSPOAP1O95153 1857 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 WDR64B1ANS9 1081 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 TIAF1O95411 115 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 TXKP42681 527 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 USP11P51784 963 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 METTL22Q9BUU2 404 aaPredicted RBP6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 ZFYVE28Q9HCC9 887 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 PIM2Q9P1W9 311 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 OAS3Q9Y6K5 1087 aaKnown RBP6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 WDR97A6NE52 1622 aa6.28□□□□□ -1.4
TOPBP1-208ENST00000511439 ARHGAP4P98171 946 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 GSTM4Q03013 218 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 SGO2Q562F6 1265 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 PEAR1Q5VY43 1037 aaPredicted RBP6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 HGSNATQ68CP4 663 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 PAOXQ6QHF9 649 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 SND1Q7KZF4 910 aaKnown RBP eCLIP6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 KRTAP1-3Q8IUG1 177 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 DDX54Q8TDD1 881 aaKnown RBP6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 MFSD14AQ96MC6 490 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 KRTAP4-12Q9BQ66 201 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 OSBPL1AQ9BXW6 950 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 CLEC4MQ9H2X3 399 aaPredicted RBP6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 GOLGA2P5Q9HBQ8 144 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 LEMD3Q9Y2U8 911 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 DNMBPQ6XZF7 1577 aa6.27□□□□□ -1.41
TOPBP1-208ENST00000511439 PRDM2Q13029 1718 aa6.26□□□□□ -1.41
TOPBP1-208ENST00000511439 FAM95CA0A1B0GW59 222 aa6.26□□□□□ -1.41
TOPBP1-208ENST00000511439 CYP11A1P05108 521 aa6.26□□□□□ -1.41
TOPBP1-208ENST00000511439 A0A096LPE4 126 aa6.25□□□□□ -1.41
TOPBP1-208ENST00000511439 A0A1W2PPZ6 126 aa6.25□□□□□ -1.41
TOPBP1-208ENST00000511439 TAL1P17542 331 aaPredicted RBP6.25□□□□□ -1.41
TOPBP1-208ENST00000511439 PCDH1Q08174 1060 aa6.25□□□□□ -1.41
TOPBP1-208ENST00000511439 NFKBIBQ15653 356 aa6.25□□□□□ -1.41
TOPBP1-208ENST00000511439 CCNJLQ8IV13 435 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms