RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 MYRIPQ8NFW9 859 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 SYTL4Q96C24 671 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-204ENST00000501271 C8orf76Q96K31 380 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 FAM13BQ9NYF5 915 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 RTEL1Q9NZ71 1219 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 ORC3Q9UBD5 711 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-204ENST00000501271 TBC1D2BQ9UPU7 963 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 WDR19Q8NEZ3 1342 aa11.52□□□□□ -0.57
CLIP1-204ENST00000501271 PDE8AO60658 829 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 KINO60870 393 aaKnown RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 IDH1O75874 414 aaKnown RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 STX1AQ16623 288 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 FBXO18Q8NFZ0 1043 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 WWC3Q9ULE0 1092 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 CLIC4Q9Y696 253 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 COL16A1Q07092 1604 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 ZNF532Q9HCE3 1301 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 KIF28PB7ZC32 967 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 DHX16O60231 1041 aaKnown RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 CAVIN2O95810 425 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 POLR3DP05423 398 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 ARID4AP29374 1257 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 LRMPQ12912 555 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 TTF1Q15361 905 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 ZSCAN25Q6NSZ9 544 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 CYB5R4Q7L1T6 521 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 DZIP3Q86Y13 1208 aaKnown RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 LINC00301Q8NCQ3 95 aa11.51□□□□□ -0.57
CLIP1-204ENST00000501271 ERCC4Q92889 916 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-204ENST00000501271 TCRBV5S4A2TA0A5A2 114 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 CPLX1O14810 134 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 PDE6AP16499 860 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 UBE3CQ15386 1083 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 DRC7Q8IY82 874 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 FMR1NBQ8N0W7 255 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-204ENST00000501271 HELBQ8NG08 1087 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-204ENST00000501271 MRPS27Q92552 414 aaKnown RBP11.5□□□□□ -0.57
CLIP1-204ENST00000501271 PRIMPOLQ96LW4 560 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 PDCL3Q9H2J4 239 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 PHLPP1O60346 1717 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 A0A1B0GVL5 298 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 MYSM1Q5VVJ2 828 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 ADALQ6DHV7 355 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 ZNF34Q8IZ26 560 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 SENP2Q9HC62 589 aa11.5□□□□□ -0.57
CLIP1-204ENST00000501271 NEDD4P46934 1319 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 ERVV-1B6SEH8 477 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 SH2B2O14492 632 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 APPP05067 770 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 RXRAP19793 462 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 FGFR2P21802 821 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 IL6STP40189 918 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 NDUFA8P51970 172 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 STK38Q15208 465 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 PUM3Q15397 648 aaKnown RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 CCDC144BQ3MJ40 725 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 DHX40Q8IX18 779 aaKnown RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 CCDC144CPQ8IYA2 1237 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 AIFM3Q96NN9 605 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 POLR3EQ9NVU0 708 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 CLIP2Q9UDT6 1046 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 ANGEL1Q9UNK9 670 aaKnown RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 ZMYM6O95789 1325 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 A0A1W2PQ27 194 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 A0A1W2PQ64 194 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 A0A1W2PQD8 194 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 B4E1Z4 1266 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 GOLGA6L19H0YKK7 550 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 SNAP23O00161 211 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 KIF23Q02241 960 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-204ENST00000501271 TRDNQ13061 729 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 SARM1Q6SZW1 724 aa11.49□□□□□ -0.57
CLIP1-204ENST00000501271 YEATS4O95619 227 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 BRAPQ7Z569 592 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 LPIN2Q92539 896 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 MROH5Q6ZUA9 1318 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 EXOC5O00471 708 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 SPTLC2O15270 562 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 UQCRFS1P1P0C7P4 283 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 CDC25BP30305 580 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 METAP2P50579 478 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLIP1-204ENST00000501271 SF3A1Q15459 793 aaKnown RBP11.48□□□□□ -0.57
CLIP1-204ENST00000501271 KCNG4Q8TDN1 519 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 UBE2Q2Q8WVN8 375 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 TSC1Q92574 1164 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 FBXW7Q969H0 707 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 STRBPQ96SI9 672 aaKnown RBP11.48□□□□□ -0.57
CLIP1-204ENST00000501271 EPB41L4AQ9HCS5 686 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-204ENST00000501271 INCENPQ9NQS7 918 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 ANO10Q9NW15 660 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 TIAM2Q8IVF5 1701 aa11.48□□□□□ -0.57
CLIP1-204ENST00000501271 CDC27P30260 824 aa11.47□□□□□ -0.57
CLIP1-204ENST00000501271 GTF2F1P35269 517 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP1-204ENST00000501271 RASGRF1Q13972 1273 aa11.47□□□□□ -0.57
CLIP1-204ENST00000501271 SUSD4Q5VX71 490 aa11.47□□□□□ -0.57
CLIP1-204ENST00000501271 APOA5Q6Q788 366 aa11.47□□□□□ -0.57
CLIP1-204ENST00000501271 SPATA5Q8NB90 893 aa11.47□□□□□ -0.57
CLIP1-204ENST00000501271 CACTINQ8WUQ7 758 aaKnown RBP11.47□□□□□ -0.57
CLIP1-204ENST00000501271 AIDAQ96BJ3 306 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms