RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	MEGF10	Q96KG7	1140 aa		7.35	□□□□□ -1.23
HMGXB4-208	ENST00000498325	NOS1	P29475	1434 aa		7.35	□□□□□ -1.23
HMGXB4-208	ENST00000498325	ADGRL3	Q9HAR2	1447 aa		7.35	□□□□□ -1.23
HMGXB4-208	ENST00000498325	VPS72	Q15906	364 aa		7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	NFATC2IP	Q8NCF5	419 aa		7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	TPCN2	Q8NHX9	752 aa		7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	FMNL2	Q96PY5	1086 aa		7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	7.34	□□□□□ -1.23
HMGXB4-208	ENST00000498325	KIF1B	O60333	1816 aa		7.34	□□□□□ -1.24
HMGXB4-208	ENST00000498325	IRAK1	P51617	712 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	IGF2-AS	Q6U949	168 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	SLC51A	Q86UW1	340 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	FAM35A	Q86V20	835 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TRIM50	Q86XT4	487 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	DEPDC4	Q8N2C3	294 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	HIRIP3	Q9BW71	556 aa	Predicted RBP	7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CARD11	Q9BXL7	1154 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	GSX2	Q9BZM3	304 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	SLC52A1	Q9NWF4	448 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CLTCL1	P53675	1640 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	SPATA31E1	Q6ZUB1	1445 aa		7.33	□□□□□ -1.24
HMGXB4-208	ENST00000498325	RPGRIP1L	Q68CZ1	1315 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	USP17L5	A8MUK1	530 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CPB1	P15086	417 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	NFKB1	P19838	968 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	FST	P19883	344 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	XPC	Q01831	940 aa	Predicted RBP	7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CCIN	Q13939	588 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	HIF1A	Q16665	826 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	WFDC8	Q8IUA0	241 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CCDC9	Q9Y3X0	531 aa	Known RBP	7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PRAG1	Q86YV5	1406 aa		7.32	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PPP1R12B	O60237	982 aa	Predicted RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	RGPD1	P0DJD0	1748 aa		7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	DDX10	Q13206	875 aa	Known RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	GRIK5	Q16478	980 aa		7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PCSK7	Q16549	785 aa		7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	COL13A1	Q5TAT6	717 aa	Predicted RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ALDH16A1	Q8IZ83	802 aa		7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TNS1	Q9HBL0	1735 aa	Known RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	FRRS1L	Q9P0K9	344 aa		7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	MARF1	Q9Y4F3	1742 aa	Known RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ROCK2	O75116	1388 aa	Known RBP	7.31	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ZBTB7B	O15156	539 aa	Predicted RBP	7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TRIM37	O94972	964 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CD97	P48960	835 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TPRN	Q4KMQ1	711 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	CCDC102B	Q68D86	513 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PDGFD	Q9GZP0	370 aa	Predicted RBP	7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	KIAA1024	Q9UPX6	916 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	USP47	Q96K76	1375 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TRPM1	Q7Z4N2	1603 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PXDN	Q92626	1479 aa		7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	XRN1	Q8IZH2	1706 aa	Known RBP	7.3	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ATP1A2	P50993	1020 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PRELP	P51888	382 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	PERM1	Q5SV97	790 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ELMSAN1	Q6PJG2	1045 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	DZIP1L	Q8IYY4	767 aa	Known RBP	7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	LPIN3	Q9BQK8	851 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	SYT17	Q9BSW7	474 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	ALG2	Q9H553	416 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	AKTIP	Q9H8T0	292 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	MET	P08581	1390 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	GPRASP1	Q5JY77	1395 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	NALCN	Q8IZF0	1738 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	NRK	Q7Z2Y5	1582 aa		7.29	□□□□□ -1.24
HMGXB4-208	ENST00000498325	TMEM131L	A2VDJ0	1609 aa		7.28	□□□□□ -1.24
HMGXB4-208	ENST00000498325		M0R2N6	131 aa		7.28	□□□□□ -1.24
HMGXB4-208	ENST00000498325	HSPA6	P17066	643 aa		7.28	□□□□□ -1.24
HMGXB4-208	ENST00000498325	KIAA1210	Q9ULL0	1709 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	DEAF1	O75398	565 aa	Predicted RBP	7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	PRKCSH	P14314	528 aa	Predicted RBP	7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	TAL1	P17542	331 aa	Predicted RBP	7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	PLAUR	Q03405	335 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	PARD3	Q8TEW0	1356 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	MYO5B	Q9ULV0	1848 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	NUP188	Q5SRE5	1749 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	WASHC2A	Q641Q2	1341 aa		7.27	□□□□□ -1.25
HMGXB4-208	ENST00000498325	MYOM1	P52179	1685 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	RREB1	Q92766	1687 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	CCDC7	Q96M83	1385 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	ST20-MTHFS	A0A0A6YYL1	179 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	DLL1	O00548	723 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	ANP32C	O43423	234 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	FOXO3	O43524	673 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	C21orf2	O43822	256 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	PTCD1	O75127	700 aa	Known RBP	7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	ZBTB7A	O95365	584 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	MAP3K6	O95382	1288 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	CLDN10	P78369	228 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	IER5	Q5VY09	327 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	TSEN2	Q8NCE0	465 aa	Known RBP	7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	TTC9	Q92623	222 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	OAS3	Q9Y6K5	1087 aa	Known RBP	7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	SHANK3	Q9BYB0	1731 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	IFT172	Q9UG01	1749 aa		7.26	□□□□□ -1.25
HMGXB4-208	ENST00000498325	FAM83G	A6ND36	823 aa		7.25	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms