RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 GSDMAQ96QA5 445 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 RPS6KC1Q96S38 1066 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 TUFT1Q9NNX1 390 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 TFIP11Q9UBB9 837 aaKnown RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 MCF2P10911 925 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 GNAI1P63096 354 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 SSRP1Q08945 709 aaKnown RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 RPS6KA2Q15349 733 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 OSCP1Q8WVF1 389 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 BEGAINQ9BUH8 593 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 EPS15L1Q9UBC2 864 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 CCDC7Q96M83 1385 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 SMARCA5O60264 1052 aaPredicted RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 SAMD1Q6SPF0 538 aaPredicted RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 CNTROBQ8N137 903 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 KIF1BPQ96EK5 621 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 PRG3Q9Y2Y8 225 aaPredicted RBP6.53□□□□□ -1.36
USF3-204ENST00000496826 PHKA1P46020 1223 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 PPP2R5CQ13362 524 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 KRBA2Q6ZNG9 492 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 SUFUQ9UMX1 484 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 UACAQ9BZF9 1416 aa6.53□□□□□ -1.36
USF3-204ENST00000496826 APAF1O14727 1248 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 CAPN9O14815 690 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 ERCC3P19447 782 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 MX1P20591 662 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 NEK2P51955 445 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 AP1S1P61966 158 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 PARP10Q53GL7 1025 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 SRRM1Q8IYB3 904 aaKnown RBP6.52□□□□□ -1.36
USF3-204ENST00000496826 TTC25Q96NG3 672 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 LZTFL1Q9NQ48 299 aa6.52□□□□□ -1.36
USF3-204ENST00000496826 DIS3Q9Y2L1 958 aaKnown RBP6.52□□□□□ -1.36
USF3-204ENST00000496826 TMEM191CA6NGB0 347 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TMEM191BP0C7N4 346 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TRIM71Q2Q1W2 868 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 TTC23Q5W5X9 447 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 SPATS2Q86XZ4 545 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 BANK1Q8NDB2 785 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 HSPH1Q92598 858 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 RILPL2Q969X0 211 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 GTPBP10A4D1E9 387 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 ECEL1O95672 775 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TTC4O95801 387 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 KANK3Q6NY19 840 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 RFT1Q96AA3 541 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TTC17Q96AE7 1141 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 CEP19Q96LK0 163 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 FAM81BQ96LP2 452 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 SNX4O95219 450 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 IL1RL1Q01638 556 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 HLTFQ14527 1009 aaKnown RBP eCLIP6.52□□□□□ -1.37
USF3-204ENST00000496826 PSMD6Q15008 389 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 NUTM1Q86Y26 1132 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 KIF18AQ8NI77 898 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 ABCF3Q9NUQ8 709 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 MCM4P33991 863 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 INTS8Q75QN2 995 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 TSC1Q92574 1164 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 MIS12Q9H081 205 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TCP11L1Q9NUJ3 509 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 STX18Q9P2W9 335 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 CAPN7Q9Y6W3 813 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 BRPF1P55201 1214 aaPredicted RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 FBXW4P57775 412 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 PDE1CQ14123 709 aaPredicted RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 CLEC16AQ2KHT3 1053 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 ANO6Q4KMQ2 910 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 SHCBP1Q8NEM2 672 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 LZICQ8WZA0 190 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 TADA1Q96BN2 335 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 KLHL31Q9H511 634 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 MBIPQ9NS73 344 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 ABI2Q9NYB9 513 aaPredicted RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 I3L4J1 428 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 DEAF1O75398 565 aaPredicted RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 KHDRBS3O75525 346 aaKnown RBP6.52□□□□□ -1.37
USF3-204ENST00000496826 ATP6V1AP38606 617 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 SNX19Q92543 992 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 MCUR1Q96AQ8 359 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 EFHD1Q9BUP0 239 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 PPME1Q9Y570 386 aa6.52□□□□□ -1.37
USF3-204ENST00000496826 SMNDC1O75940 238 aaKnown RBP eCLIP6.51□□□□□ -1.37
USF3-204ENST00000496826 ITIH3Q06033 890 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 CHCHD3Q9NX63 227 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.51□□□□□ -1.37
USF3-204ENST00000496826 MYO1BO43795 1136 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 SLC4A2P04920 1241 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 SERPINB2P05120 415 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 PPIDQ08752 370 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 KRT32Q14532 448 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ANO5Q75V66 913 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 FAM200AQ8TCP9 573 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 ARHGEF2Q92974 986 aaKnown RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 TSPY26PQ9H489 355 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 NKIRAS1Q9NYS0 192 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 H2AFY2Q9P0M6 372 aaPredicted RBP6.51□□□□□ -1.37
USF3-204ENST00000496826 GOLGA8MH3BSY2 632 aa6.51□□□□□ -1.37
USF3-204ENST00000496826 POLR2BP30876 1174 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms