RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CYLC1P35663 651 aaPredicted RBP14.88□□□□□ -0.03
PTPRF-215ENST00000496447 LRSAM1Q6UWE0 723 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 NAP1L4Q99733 375 aaKnown RBP14.88□□□□□ -0.03
PTPRF-215ENST00000496447 SSX2IPQ9Y2D8 614 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 F13A1P00488 732 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 SNW1Q13573 536 aaKnown RBP14.88□□□□□ -0.03
PTPRF-215ENST00000496447 GOLGA6L10A0A0M3HER8 536 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 TESK2Q96S53 571 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 GPCPD1Q9NPB8 672 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 BABAM1Q9NWV8 329 aa14.88□□□□□ -0.03
PTPRF-215ENST00000496447 EDC4Q6P2E9 1401 aaKnown RBP14.88□□□□□ -0.03
PTPRF-215ENST00000496447 SUPT20HQ8NEM7 779 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 DTHD1Q6ZMT9 781 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 TTC12Q9H892 705 aaPredicted RBP14.87□□□□□ -0.03
PTPRF-215ENST00000496447 PKD2L1Q9P0L9 805 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 TIMM10P62072 90 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 DDX17Q92841 729 aaKnown RBP14.87□□□□□ -0.03
PTPRF-215ENST00000496447 PTPDC1A2A3K4 754 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 A1BGP04217 495 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 TNNQ9UQP3 1299 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 IKBKGQ9Y6K9 419 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 RTL1A6NKG5 1358 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 PLCD3Q8N3E9 789 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 SHANK2Q9UPX8 1470 aa14.87□□□□□ -0.03
PTPRF-215ENST00000496447 BAG6P46379 1132 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 CEP135Q66GS9 1140 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 WDR62O43379 1518 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 GNG11P61952 73 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 ANO6Q4KMQ2 910 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 AKNAD1Q5T1N1 836 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 USP48Q86UV5 1035 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 KIF4AO95239 1232 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 AK2P54819 239 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 GIGYF2Q6Y7W6 1299 aaKnown RBP14.86□□□□□ -0.03
PTPRF-215ENST00000496447 WDR66Q8TBY9 1149 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 RASSF4Q9H2L5 321 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 ARMT1Q9H993 441 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 PIK3C2GO75747 1445 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 DNM1Q05193 864 aaKnown RBP14.86□□□□□ -0.03
PTPRF-215ENST00000496447 TAF12Q16514 161 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 TNNI3KQ59H18 835 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 G2E3Q7L622 706 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 XAGE2Q96GT9 111 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 FPGT-TNNI3KV9GXZ4 949 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 HOOK2Q96ED9 719 aa14.86□□□□□ -0.03
PTPRF-215ENST00000496447 BICDL2A1A5D9 508 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 HOXB7P09629 217 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 RUFY3Q7L099 469 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 DACT1Q9NYF0 836 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 LGR6Q9HBX8 967 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 PDE6BP35913 854 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 MAATS1Q7Z4T9 603 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 APBB1IPQ7Z5R6 666 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-215ENST00000496447 NOD1Q9Y239 953 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 IL13P35225 146 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 TTC31Q49AM3 519 aaPredicted RBP14.85□□□□□ -0.03
PTPRF-215ENST00000496447 DNAJC10Q8IXB1 793 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 CCDC24Q8N4L8 307 aa14.85□□□□□ -0.03
PTPRF-215ENST00000496447 GJC1P36383 396 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 ZNF594Q96JF6 807 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 IVNS1ABPQ9Y6Y0 642 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 TCOF1Q13428 1488 aaKnown RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 ARID5AQ03989 594 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 BRDTQ58F21 947 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 BRAPQ7Z569 592 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 PLIN2Q99541 437 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 CHMLP26374 656 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 PRPHP41219 470 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 GABPB1Q06547 395 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 FCHSD1Q86WN1 690 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 TAF5LO75529 589 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 ZYXQ15942 572 aaKnown RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 LETM2Q2VYF4 491 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 AOPEPQ8N6M6 819 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 B4E1Z4 1266 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 EEF2P13639 858 aaKnown RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 CERS3Q8IU89 383 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 DDX12PQ92771 950 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 ZBTB40Q9NUA8 1239 aa14.84□□□□□ -0.03
PTPRF-215ENST00000496447 COL17A1Q9UMD9 1497 aaPredicted RBP14.84□□□□□ -0.03
PTPRF-215ENST00000496447 NIM1KQ8IY84 436 aa14.83□□□□□ -0.03
PTPRF-215ENST00000496447 RLBP1P12271 317 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 MSANTD4Q8NCY6 345 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 PLEKHM2Q8IWE5 1019 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 PRKG1Q13976 671 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 TICAM2Q86XR7 235 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 DBNDD2Q9BQY9 259 aa14.83□□□□□ -0.04
PTPRF-215ENST00000496447 PTGS1P23219 599 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 GRIPAP1Q4V328 841 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 AATFQ9NY61 560 aaKnown RBP eCLIP14.82□□□□□ -0.04
PTPRF-215ENST00000496447 CEP83Q9Y592 693 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 MRPS9P82933 396 aaKnown RBP14.82□□□□□ -0.04
PTPRF-215ENST00000496447 KLHDC4Q8TBB5 520 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 SELENOOQ9BVL4 669 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 ALDH1B1P30837 517 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 LPIN2Q92539 896 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 ZSWIM4Q9H7M6 989 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 GPHNQ9NQX3 736 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-215ENST00000496447 CCDC129Q6ZRS4 1044 aa14.82□□□□□ -0.04
PTPRF-215ENST00000496447 IQUBQ8NA54 791 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms