RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 PARP4Q9UKK3 1724 aaKnown RBP10.45□□□□□ -0.74
HPS4-217ENST00000496385 KCNQ2O43526 872 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 TRIM37O94972 964 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 ERCC3P19447 782 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 MTHFSDQ2M296 383 aaKnown RBP10.45□□□□□ -0.74
HPS4-217ENST00000496385 ATL3Q6DD88 541 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 TTLL5Q6EMB2 1281 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 POTEDQ86YR6 584 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 PGBD1Q96JS3 809 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 KDRP35968 1356 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 TNS2Q63HR2 1409 aa10.45□□□□□ -0.74
HPS4-217ENST00000496385 GNAI2P04899 355 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 MNAT1P51948 309 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 DDR1Q08345 913 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 BEND6Q5SZJ8 279 aaPredicted RBP10.44□□□□□ -0.74
HPS4-217ENST00000496385 CDCA7Q9BWT1 371 aaPredicted RBP10.44□□□□□ -0.74
HPS4-217ENST00000496385 NCAPD2Q15021 1401 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 ELL2O00472 640 aaPredicted RBP10.44□□□□□ -0.74
HPS4-217ENST00000496385 LARGE1O95461 756 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 LRCH2Q5VUJ6 765 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 CCDC30Q5VVM6 783 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 MPRIPQ6WCQ1 1025 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 EP400NLQ6ZTU2 488 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 CDC37L1Q7L3B6 337 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 MICALL1Q8N3F8 863 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 RUFY2Q8WXA3 655 aa10.44□□□□□ -0.74
HPS4-217ENST00000496385 TMCO5BA8MYB1 307 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 MAP2K1Q02750 393 aaPredicted RBP10.43□□□□□ -0.74
HPS4-217ENST00000496385 GNL2Q13823 731 aaKnown RBP10.43□□□□□ -0.74
HPS4-217ENST00000496385 RASEFQ8IZ41 740 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 MSANTD4Q8NCY6 345 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 ERCC4Q92889 916 aaPredicted RBP10.43□□□□□ -0.74
HPS4-217ENST00000496385 PDE11AQ9HCR9 933 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 L1RE1Q9UN81 338 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 SPG7Q9UQ90 795 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 SHANK3Q9BYB0 1731 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 MYO1BO43795 1136 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 PLEKHO1Q53GL0 409 aaPredicted RBP10.43□□□□□ -0.74
HPS4-217ENST00000496385 AKAP2Q9Y2D5 859 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 HNRNPH1P31943 449 aaKnown RBP10.43□□□□□ -0.74
HPS4-217ENST00000496385 ATP8B2P98198 1209 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 DCTN1Q14203 1278 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 ME3Q16798 604 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 TMC6Q7Z403 805 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 CNTROBQ8N137 903 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 VIPAS39Q9H9C1 493 aa10.43□□□□□ -0.74
HPS4-217ENST00000496385 ATXN2Q99700 1313 aaKnown RBP10.42□□□□□ -0.74
HPS4-217ENST00000496385 PCDH11XQ9BZA7 1347 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 PCDH11YQ9BZA8 1340 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 ARHGAP6O43182 974 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 PSMA5P28066 241 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 ST3GAL1Q11201 340 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 C11orf91Q3C1V1 193 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 FOXR1Q6PIV2 292 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 CCDC73Q6ZRK6 1079 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 CEP112Q8N8E3 955 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 CTCFLQ8NI51 663 aaPredicted RBP10.42□□□□□ -0.74
HPS4-217ENST00000496385 ADCY9O60503 1353 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 CBFA2T2O43439 604 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 KINO60870 393 aaKnown RBP10.42□□□□□ -0.74
HPS4-217ENST00000496385 RAB11FIP3O75154 756 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 PHKG2P15735 406 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 SF3B2Q13435 895 aaKnown RBP10.42□□□□□ -0.74
HPS4-217ENST00000496385 AOPEPQ8N6M6 819 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 LGR6Q9HBX8 967 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 GNL3LQ9NVN8 582 aaKnown RBP10.42□□□□□ -0.74
HPS4-217ENST00000496385 FAN1Q9Y2M0 1017 aa10.42□□□□□ -0.74
HPS4-217ENST00000496385 GOLIM4O00461 696 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 ZKSCAN1P17029 563 aaPredicted RBP10.41□□□□□ -0.74
HPS4-217ENST00000496385 NEDD9Q14511 834 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 C1orf141Q5JVX7 400 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 JMYQ8N9B5 988 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 CNNM3Q8NE01 707 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 GIMAP7Q8NHV1 300 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 CNKSR2Q8WXI2 1034 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 XPO4Q9C0E2 1151 aaKnown RBP10.41□□□□□ -0.74
HPS4-217ENST00000496385 BSDC1Q9NW68 430 aaPredicted RBP10.41□□□□□ -0.74
HPS4-217ENST00000496385 RCOR1Q9UKL0 485 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 GBP6Q6ZN66 633 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 SRGAP1Q7Z6B7 1085 aa10.41□□□□□ -0.74
HPS4-217ENST00000496385 THUMPD2Q9BTF0 503 aaKnown RBP10.41□□□□□ -0.74
HPS4-217ENST00000496385 TFIP11Q9UBB9 837 aaKnown RBP10.41□□□□□ -0.74
HPS4-217ENST00000496385 FAM160A1Q05DH4 1040 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 FAM196AQ6ZSG2 479 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 MCM10Q7L590 875 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 FERMT3Q86UX7 667 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 IFNL2Q8IZJ0 200 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 JAKMIP1Q96N16 626 aaKnown RBP10.4□□□□□ -0.74
HPS4-217ENST00000496385 IL25Q9H293 177 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 PKD1L3Q7Z443 1732 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 DLG5Q8TDM6 1919 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 VWA3AA6NCI4 1184 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 A6NNZ2 444 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 IKBKBO14920 756 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 AARSP49588 968 aaKnown RBP eCLIP10.4□□□□□ -0.74
HPS4-217ENST00000496385 IRX1P78414 480 aaPredicted RBP10.4□□□□□ -0.74
HPS4-217ENST00000496385 RESTQ13127 1097 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 MCM6Q14566 821 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 TUBB8Q3ZCM7 444 aa10.4□□□□□ -0.74
HPS4-217ENST00000496385 AMOTQ4VCS5 1084 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms