RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NHSL1Q5SYE7 1610 aa13.08□□□□□ -0.31
CHMP3-209ENST00000494623 A0A087WWV3 80 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 B4E1Z4 1266 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 EIF5P55010 431 aaKnown RBP13.08□□□□□ -0.32
CHMP3-209ENST00000494623 SPATA5Q8NB90 893 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 FBXO18Q8NFZ0 1043 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 ERCC4Q92889 916 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-209ENST00000494623 SLC5A1P13866 664 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 FGFR2P21802 821 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 HSP90AA2PQ14568 343 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-209ENST00000494623 STK38Q15208 465 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 MAGEB6Q8N7X4 407 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 STRBPQ96SI9 672 aaKnown RBP13.08□□□□□ -0.32
CHMP3-209ENST00000494623 UTP14AQ9BVJ6 771 aaKnown RBP13.08□□□□□ -0.32
CHMP3-209ENST00000494623 RTEL1Q9NZ71 1219 aa13.08□□□□□ -0.32
CHMP3-209ENST00000494623 LRP6O75581 1613 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 A0A1B0GVL5 298 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 TCRBV5S4A2TA0A5A2 114 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 CTAGE5O15320 804 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 TPM3P06753 285 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 PTGS1P23219 599 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 CRKLP46109 303 aaKnown RBP13.07□□□□□ -0.32
CHMP3-209ENST00000494623 RBM10P98175 930 aaKnown RBP13.07□□□□□ -0.32
CHMP3-209ENST00000494623 FAM160A1Q05DH4 1040 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 DDB1Q16531 1140 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 CCDC144CPQ8IYA2 1237 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 ENGASEQ8NFI3 743 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 TDRD7Q8NHU6 1098 aaKnown RBP13.07□□□□□ -0.32
CHMP3-209ENST00000494623 FBXW7Q969H0 707 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 SENP2Q9HC62 589 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 PYCARDQ9ULZ3 195 aa13.07□□□□□ -0.32
CHMP3-209ENST00000494623 ANGEL1Q9UNK9 670 aaKnown RBP13.07□□□□□ -0.32
CHMP3-209ENST00000494623 C11orf57Q6ZUT1 292 aaPredicted RBP13.07□□□□□ -0.32
CHMP3-209ENST00000494623 GOLGA6L19H0YKK7 550 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 METAP2P50579 478 aaKnown RBP eCLIP13.06□□□□□ -0.32
CHMP3-209ENST00000494623 ZNF75DP51815 510 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 RASGRF1Q13972 1273 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 SYNE3Q6ZMZ3 975 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 NFXL1Q6ZNB6 911 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 CCDC186Q7Z3E2 898 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 LINC00301Q8NCQ3 95 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 AIFM3Q96NN9 605 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 NRBP1Q9UHY1 535 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 AKAP11Q9UKA4 1901 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 KIF28PB7ZC32 967 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 PATL2C9JE40 543 aaKnown RBP13.06□□□□□ -0.32
CHMP3-209ENST00000494623 SH2B2O14492 632 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-209ENST00000494623 BCAMP50895 628 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 CTDSPL2Q05D32 466 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 MAP3K12Q12852 859 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 ADALQ6DHV7 355 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 MRPS27Q92552 414 aaKnown RBP13.06□□□□□ -0.32
CHMP3-209ENST00000494623 SDF4Q9BRK5 362 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 ARMT1Q9H993 441 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.06□□□□□ -0.32
CHMP3-209ENST00000494623 WDR19Q8NEZ3 1342 aa13.06□□□□□ -0.32
CHMP3-209ENST00000494623 MBD4O95243 580 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 MYSM1Q5VVJ2 828 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 MICU3Q86XE3 530 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 IFNL3Q8IZI9 196 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 KIAA1524Q8TCG1 905 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 PHKBQ93100 1093 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 NIP7Q9Y221 180 aaKnown RBP eCLIP13.05□□□□□ -0.32
CHMP3-209ENST00000494623 NUP98P52948 1817 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 LOC102724428A0A0B4J2F2 783 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 CAVIN2O95810 425 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 NDUFA8P51970 172 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 SIK1P57059 783 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 IQCB1Q15051 598 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 STX1AQ16623 288 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 PLA2G4DQ86XP0 818 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 STK11IPQ8N1F8 1099 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 AK7Q96M32 723 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 ALG1Q9BT22 464 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 MYL10Q9BUA6 226 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 NAPBQ9H115 298 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 NEDD4P46934 1319 aa13.05□□□□□ -0.32
CHMP3-209ENST00000494623 SPTLC2O15270 562 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 PRKAB2O43741 272 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 CDC27P30260 824 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 IGHMBP2P38935 993 aaKnown RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 ITPK1Q13572 414 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 FMR1NBQ8N0W7 255 aaPredicted RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 IGDCC4Q8TDY8 1250 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 ZMYM6O95789 1325 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 BECN2A8MW95 431 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 CAMTA2O94983 1202 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 KIF23Q02241 960 aaPredicted RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 CCDC152Q4G0S7 254 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 TMEM67Q5HYA8 995 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 APOA5Q6Q788 366 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 BRAPQ7Z569 592 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 KCNG4Q8TDN1 519 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 SPTLC3Q9NUV7 552 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 COL14A1Q05707 1796 aaKnown RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 RRP9O43818 475 aaKnown RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 LRMPQ12912 555 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 MARCH10Q8NA82 808 aaPredicted RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 EPB41L4AQ9HCS5 686 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms