RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 CRTC2Q53ET0 693 aaPredicted RBP6.99□□□□□ -1.29
ATG4A-208ENST00000489247 PLEKHO1Q53GL0 409 aaPredicted RBP6.99□□□□□ -1.29
ATG4A-208ENST00000489247 SLC27A3Q5K4L6 730 aa6.99□□□□□ -1.29
ATG4A-208ENST00000489247 LYSMD3Q7Z3D4 306 aa6.99□□□□□ -1.29
ATG4A-208ENST00000489247 TPCN2Q8NHX9 752 aa6.99□□□□□ -1.29
ATG4A-208ENST00000489247 DNAAF2Q9NVR5 837 aaKnown RBP6.99□□□□□ -1.29
ATG4A-208ENST00000489247 ZNF358Q9NW07 568 aa6.99□□□□□ -1.29
ATG4A-208ENST00000489247 TSPYL4Q9UJ04 414 aa6.99□□□□□ -1.29
ATG4A-208ENST00000489247 LAS1LQ9Y4W2 734 aaKnown RBP6.99□□□□□ -1.29
ATG4A-208ENST00000489247 ZNF335Q9H4Z2 1342 aaPredicted RBP6.99□□□□□ -1.29
ATG4A-208ENST00000489247 PXDNLA1KZ92 1463 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 IBTKQ9P2D0 1353 aaPredicted RBP6.98□□□□□ -1.29
ATG4A-208ENST00000489247 FAM208AQ9UK61 1670 aaKnown RBP6.98□□□□□ -1.29
ATG4A-208ENST00000489247 DKK1O94907 266 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 RASA1P20936 1047 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 GPC1P35052 558 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 XPCQ01831 940 aaPredicted RBP6.98□□□□□ -1.29
ATG4A-208ENST00000489247 TLR1Q15399 786 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 TRIM50Q86XT4 487 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 ITPRIPQ8IWB1 547 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 KRTAP4-12Q9BQ66 201 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 KRTAP9-9Q9BYP9 154 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 KRTAP9-4Q9BYQ2 154 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 PODXL2Q9NZ53 605 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 SLAIN2Q9P270 581 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 USP3Q9Y6I4 520 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 MRC1P22897 1456 aa6.98□□□□□ -1.29
ATG4A-208ENST00000489247 BTBD11A6QL63 1104 aa6.97□□□□□ -1.29
ATG4A-208ENST00000489247 SFI1A8K8P3 1242 aa6.97□□□□□ -1.29
ATG4A-208ENST00000489247 KRT76Q01546 638 aa6.97□□□□□ -1.29
ATG4A-208ENST00000489247 C8orf34Q49A92 452 aa6.97□□□□□ -1.29
ATG4A-208ENST00000489247 ZNF385CQ66K41 422 aaPredicted RBP6.97□□□□□ -1.29
ATG4A-208ENST00000489247 CCDC102BQ68D86 513 aa6.97□□□□□ -1.29
ATG4A-208ENST00000489247 LRRC59Q96AG4 307 aaKnown RBP6.97□□□□□ -1.29
ATG4A-208ENST00000489247 LTV1Q96GA3 475 aaPredicted RBP6.97□□□□□ -1.29
ATG4A-208ENST00000489247 ZSCAN10Q96SZ4 725 aaPredicted RBP6.97□□□□□ -1.29
ATG4A-208ENST00000489247 ATP10DQ9P241 1426 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 SLC35F4A4IF30 521 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 RNMTO43148 476 aaKnown RBP6.96□□□□□ -1.3
ATG4A-208ENST00000489247 PHKA2P46019 1235 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 ATP1A2P50993 1020 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 EIF4A1P60842 406 aaKnown RBP6.96□□□□□ -1.3
ATG4A-208ENST00000489247 PTK7Q13308 1070 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 KRT24Q2M2I5 525 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 CCDC30Q5VVM6 783 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 ZNF530Q6P9A1 599 aaPredicted RBP6.96□□□□□ -1.3
ATG4A-208ENST00000489247 SVOPQ8N4V2 548 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 USHBP1Q8N6Y0 703 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 STK32AQ8WU08 396 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 GCC1Q96CN9 775 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 CNTNAP3BQ96NU0 1288 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 SPOCK3Q9BQ16 436 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 CNTNAP3Q9BZ76 1288 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 ZMIZ1Q9ULJ6 1067 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 USTQ9Y2C2 406 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 NHSL1Q5SYE7 1610 aa6.96□□□□□ -1.3
ATG4A-208ENST00000489247 KDM3BQ7LBC6 1761 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 TMEM88BA6NKF7 163 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L15C9J2P7 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L10C9JJH3 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L13C9JLJ4 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L12C9JPN9 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L11C9JVI0 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L21D6R901 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L18D6R9N7 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L22D6RA61 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L17D6RBQ6 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L19D6RCP7 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L20D6RJB6 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 ELL2O00472 640 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-208ENST00000489247 PPFIA3O75145 1194 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 LGR5O75473 907 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 CCT4P50991 539 aaKnown RBP6.95□□□□□ -1.3
ATG4A-208ENST00000489247 SMTNP53814 917 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 NUCB1Q02818 461 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 USP17L24Q0WX57 530 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 NBPF10Q6P3W6 841 aaKnown RBP6.95□□□□□ -1.3
ATG4A-208ENST00000489247 RPAP2Q8IXW5 612 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-208ENST00000489247 TNS4Q8IZW8 715 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 SIX5Q8N196 739 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 LARGE2Q8N3Y3 721 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 NBPF15Q8N660 670 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 CCDC155Q8N6L0 562 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 SLC4A9Q96Q91 983 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 NOVA2Q9UNW9 492 aaKnown RBP6.95□□□□□ -1.3
ATG4A-208ENST00000489247 MEGF6O75095 1541 aa6.95□□□□□ -1.3
ATG4A-208ENST00000489247 AHDC1Q5TGY3 1603 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-208ENST00000489247 LTBP4Q8N2S1 1624 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 KDM6AO15550 1401 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-208ENST00000489247 COL5A2P05997 1499 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-208ENST00000489247 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 A6NJY4 79 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 SPATA31C2B4DYI2 1134 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 PHKG2P15735 406 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 EPHA4P54764 986 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 MARSP56192 900 aaKnown RBP6.94□□□□□ -1.3
ATG4A-208ENST00000489247 ZC3H6P61129 1189 aaKnown RBP6.94□□□□□ -1.3
ATG4A-208ENST00000489247 C4orf17Q53FE4 359 aa6.94□□□□□ -1.3
ATG4A-208ENST00000489247 C1orf141Q5JVX7 400 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms