RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MEGF11A6BM72 1044 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 ECEL1O95672 775 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 CYP11A1P05108 521 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 CTSBP07858 339 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 BMP3P12645 472 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 DRD2P14416 443 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 FSTP19883 344 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 UVSSAQ2YD98 709 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 DDX54Q8TDD1 881 aaKnown RBP8.85□□□□□ -0.99
PTPN4-212ENST00000488896 TMPRSS13Q9BYE2 586 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 CYP4F12Q9HCS2 524 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 AKAP2Q9Y2D5 859 aa8.85□□□□□ -0.99
PTPN4-212ENST00000488896 LOC100996750A0A140TA64 210 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 FMR1Q06787 632 aaKnown RBP eCLIP8.84□□□□□ -0.99
PTPN4-212ENST00000488896 FAAP100Q0VG06 881 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 EXOSC6Q5RKV6 272 aaKnown RBP8.84□□□□□ -0.99
PTPN4-212ENST00000488896 TRIM42Q8IWZ5 723 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 CORO1BQ9BR76 489 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 TRIM56Q9BRZ2 755 aaKnown RBP8.84□□□□□ -0.99
PTPN4-212ENST00000488896 KRTAP4-6Q9BYQ5 205 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 NRSN2Q9GZP1 204 aa8.84□□□□□ -0.99
PTPN4-212ENST00000488896 HMX2A2RU54 273 aa8.83□□□□□ -1
PTPN4-212ENST00000488896 RXRBP28702 533 aa8.83□□□□□ -1
PTPN4-212ENST00000488896 PTPN12Q05209 780 aaKnown RBP8.83□□□□□ -1
PTPN4-212ENST00000488896 FAM20CQ8IXL6 584 aa8.83□□□□□ -1
PTPN4-212ENST00000488896 ZC3H12CQ9C0D7 883 aaKnown RBP8.83□□□□□ -1
PTPN4-212ENST00000488896 GPN3Q9UHW5 284 aaPredicted RBP8.83□□□□□ -1
PTPN4-212ENST00000488896 EIF4EBP3O60516 100 aaPredicted RBP8.82□□□□□ -1
PTPN4-212ENST00000488896 P4HBP07237 508 aaKnown RBP8.82□□□□□ -1
PTPN4-212ENST00000488896 ATP2B2Q01814 1243 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 PDE3AQ14432 1141 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 SGO2Q562F6 1265 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 AKAP4Q5JQC9 854 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.82□□□□□ -1
PTPN4-212ENST00000488896 BEND4Q6ZU67 534 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 SMG8Q8ND04 991 aaKnown RBP8.82□□□□□ -1
PTPN4-212ENST00000488896 C7orf69Q9H7B7 122 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 RAD18Q9NS91 495 aa8.82□□□□□ -1
PTPN4-212ENST00000488896 USP11P51784 963 aa8.81□□□□□ -1
PTPN4-212ENST00000488896 RPS26P11Q5JNZ5 115 aaPredicted RBP8.81□□□□□ -1
PTPN4-212ENST00000488896 SND1Q7KZF4 910 aaKnown RBP eCLIP8.81□□□□□ -1
PTPN4-212ENST00000488896 Q8N3U1 123 aa8.81□□□□□ -1
PTPN4-212ENST00000488896 TIAF1O95411 115 aa8.8□□□□□ -1
PTPN4-212ENST00000488896 ALG1LQ6GMV1 187 aa8.8□□□□□ -1
PTPN4-212ENST00000488896 SUGCTQ9HAC7 445 aa8.8□□□□□ -1
PTPN4-212ENST00000488896 IGLV1-40P01703 118 aa8.79□□□□□ -1
PTPN4-212ENST00000488896 MAP4P27816 1152 aaKnown RBP8.79□□□□□ -1
PTPN4-212ENST00000488896 SOX4Q06945 474 aaPredicted RBP8.79□□□□□ -1
PTPN4-212ENST00000488896 AP3B2Q13367 1082 aa8.79□□□□□ -1
PTPN4-212ENST00000488896 CLEC10AQ8IUN9 316 aa8.79□□□□□ -1
PTPN4-212ENST00000488896 FBF1Q8TES7 1133 aa8.79□□□□□ -1
PTPN4-212ENST00000488896 OSBPL7Q9BZF2 842 aa8.79□□□□□ -1
PTPN4-212ENST00000488896 LDHBP07195 334 aaKnown RBP8.78□□□□□ -1
PTPN4-212ENST00000488896 ADH5P11766 374 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 HP1BP3Q5SSJ5 553 aaPredicted RBP8.78□□□□□ -1
PTPN4-212ENST00000488896 DYMQ7RTS9 669 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 C2CD4AQ8NCU7 369 aaPredicted RBP8.78□□□□□ -1
PTPN4-212ENST00000488896 FBLIM1Q8WUP2 373 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 FAM83CQ9BQN1 747 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 ZFYVE1Q9HBF4 777 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 TMEM39AQ9NV64 488 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 AP4E1Q9UPM8 1137 aa8.78□□□□□ -1
PTPN4-212ENST00000488896 ANKRD33BA6NCL7 494 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 XRCC5P13010 732 aaKnown RBP8.77□□□□□ -1.01
PTPN4-212ENST00000488896 LIG1P18858 919 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 PPP2R3AQ06190 1150 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 NFIAQ12857 509 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 CDPF1Q6NVV7 123 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 HIF3AQ9Y2N7 669 aa8.77□□□□□ -1.01
PTPN4-212ENST00000488896 FBXO24O75426 580 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 RAB6AP20340 208 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 NFKBIBQ15653 356 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 RNF43Q68DV7 783 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 TPTE2Q6XPS3 522 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 WDR89Q96FK6 387 aaPredicted RBP8.76□□□□□ -1.01
PTPN4-212ENST00000488896 CCDC86Q9H6F5 360 aaKnown RBP8.76□□□□□ -1.01
PTPN4-212ENST00000488896 SPG7Q9UQ90 795 aa8.76□□□□□ -1.01
PTPN4-212ENST00000488896 GSC2O15499 205 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 AOC2O75106 756 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 GSTT1P30711 240 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 C3orf58Q8NDZ4 430 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 KCNB2Q92953 911 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 MFSD14AQ96MC6 490 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 GZF1Q9H116 711 aaPredicted RBP8.75□□□□□ -1.01
PTPN4-212ENST00000488896 ACTL7BQ9Y614 415 aa8.75□□□□□ -1.01
PTPN4-212ENST00000488896 FAM95CA0A1B0GW59 222 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 GSTP1P09211 210 aaKnown RBP8.74□□□□□ -1.01
PTPN4-212ENST00000488896 SSTR4P31391 388 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 SULF2Q8IWU5 870 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 FBXL6Q8N531 539 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 STK35Q8TDR2 534 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 WDR18Q9BV38 432 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 CBX8Q9HC52 389 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 RNF112Q9ULX5 631 aa8.74□□□□□ -1.01
PTPN4-212ENST00000488896 TGFB1P01137 390 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 ASPAP45381 313 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 XP32Q5T750 250 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 DBNDD2Q9BQY9 259 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 LGR6Q9HBX8 967 aa8.73□□□□□ -1.01
PTPN4-212ENST00000488896 ZFP64Q9NPA5 681 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms