RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TNNI3KQ59H18 835 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 DTHD1Q6ZMT9 781 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 NIP7Q9Y221 180 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL7A1-210ENST00000487017 FPGT-TNNI3KV9GXZ4 949 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 ZNF75DP51815 510 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 NLRP3Q96P20 1036 aa18.59■□□□□ 0.57
COL7A1-210ENST00000487017 ADGRL2O95490 1459 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 ST5P78524 1137 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 TTC16Q8NEE8 873 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 A0A1W2PRG0 241 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 ANO1Q5XXA6 986 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 IPO4Q8TEX9 1081 aaKnown RBP18.58■□□□□ 0.57
COL7A1-210ENST00000487017 BICD1Q96G01 975 aa18.58■□□□□ 0.57
COL7A1-210ENST00000487017 EVCP57679 992 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 ARID5AQ03989 594 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 CBX8Q9HC52 389 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 EDC4Q6P2E9 1401 aaKnown RBP18.58■□□□□ 0.56
COL7A1-210ENST00000487017 UNC13AQ9UPW8 1703 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 RILPL1Q5EBL4 403 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 HDXQ7Z353 690 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 DZIP3Q86Y13 1208 aaKnown RBP18.58■□□□□ 0.56
COL7A1-210ENST00000487017 HOMER2Q9NSB8 354 aa18.58■□□□□ 0.56
COL7A1-210ENST00000487017 SETDB2Q96T68 719 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 STMN4Q9H169 189 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 IKBKGQ9Y6K9 419 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 HOXB7P09629 217 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 ACTN2P35609 894 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 IP6K1Q92551 441 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 SERPINA10Q9UK55 444 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 PPP2R3AQ06190 1150 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 RIOK3O14730 519 aaKnown RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 PAXIP1Q6ZW49 1069 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 TSGA10Q9BZW7 698 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 GADD45BO75293 160 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 HELBQ8NG08 1087 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 LEO1Q8WVC0 666 aaPredicted RBP18.57■□□□□ 0.56
COL7A1-210ENST00000487017 KIF24Q5T7B8 1368 aa18.57■□□□□ 0.56
COL7A1-210ENST00000487017 GNA11P29992 359 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 MCM9Q9NXL9 1143 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 C6orf163Q5TEZ5 329 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 NGLY1Q96IV0 654 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 TMEM87BQ96K49 555 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 FAM227BQ96M60 508 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 EBAG9O00559 213 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 KIF4AO95239 1232 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 VAV2P52735 878 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 ZNF804AQ7Z570 1209 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 MYRIPQ8NFW9 859 aa18.56■□□□□ 0.56
COL7A1-210ENST00000487017 SMAP1Q8IYB5 467 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-210ENST00000487017 SIRT1Q96EB6 747 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 NCKAP5LQ9HCH0 1330 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 CCDC122Q5T0U0 273 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 FAM173BQ6P4H8 233 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 VWA3AA6NCI4 1184 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 PHACTR2O75167 634 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 CCDC77Q9BR77 488 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 METTL22Q9BUU2 404 aaPredicted RBP18.55■□□□□ 0.56
COL7A1-210ENST00000487017 KCNH3Q9ULD8 1083 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 SBNO1A3KN83 1393 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 PNMA6EA0A0J9YXQ4 647 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 EYA2O00167 538 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 IL2RBP14784 551 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 GTF3C6Q969F1 213 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 A0A1B0GUL7 405 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 MBD4O95243 580 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 TERF1P54274 439 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 IGSF22Q8N9C0 903 aa18.55■□□□□ 0.56
COL7A1-210ENST00000487017 FANCCQ00597 558 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 SMARCC2Q8TAQ2 1214 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 CTNND2Q9UQB3 1225 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 DEXIO95424 95 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 TRIM14Q14142 442 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 ZKSCAN3Q9BRR0 538 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 IMPACTQ9P2X3 320 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 USP19O94966 1318 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 ZMYM3Q14202 1370 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 PICALMQ13492 652 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 ANKS4BQ8N8V4 417 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 TMEM87AQ8NBN3 555 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 DBNDD2Q9BQY9 259 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 GCP02774 474 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 CCT6AP40227 531 aaKnown RBP18.54■□□□□ 0.56
COL7A1-210ENST00000487017 TNNI2P48788 182 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 ZNF174Q15697 407 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 MICALL1Q8N3F8 863 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 MRVI1Q9Y6F6 885 aa18.54■□□□□ 0.56
COL7A1-210ENST00000487017 B4E1Z4 1266 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 IGSF3O75054 1194 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 U2AF2P26368 475 aaKnown RBP eCLIP18.53■□□□□ 0.56
COL7A1-210ENST00000487017 TIMM10P62072 90 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 PLBD2Q8NHP8 589 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 NCOA5Q9HCD5 579 aaKnown RBP18.53■□□□□ 0.56
COL7A1-210ENST00000487017 BRD1O95696 1058 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 MSL1Q68DK7 614 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 CCDC121Q6ZUS5 278 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 ARFGAP2Q8N6H7 521 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 IFT81Q8WYA0 676 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 PPP1R2P41236 205 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 TNNC1P63316 161 aa18.53■□□□□ 0.56
COL7A1-210ENST00000487017 TUBB2AQ13885 445 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms