RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 AFMP43652 599 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 PDE4BQ07343 736 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 RIMBP2O15034 1052 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 RRP9O43818 475 aaKnown RBP15.28■□□□□ 0.04
HMGN1-216ENST00000486741 UVSSAQ2YD98 709 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 MNS1Q8NEH6 495 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 ZNF622Q969S3 477 aaKnown RBP eCLIP15.28■□□□□ 0.04
HMGN1-216ENST00000486741 ZKSCAN5Q9Y2L8 839 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 LMOD1P29536 600 aaPredicted RBP15.28■□□□□ 0.04
HMGN1-216ENST00000486741 KCNG4Q8TDN1 519 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 CPLX3Q8WVH0 158 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 KAT14Q9H8E8 782 aa15.28■□□□□ 0.04
HMGN1-216ENST00000486741 AATFQ9NY61 560 aaKnown RBP eCLIP15.28■□□□□ 0.04
HMGN1-216ENST00000486741 FSD2A1L4K1 749 aa15.27■□□□□ 0.04
HMGN1-216ENST00000486741 IPO7O95373 1038 aaKnown RBP15.27■□□□□ 0.04
HMGN1-216ENST00000486741 ZMYM1Q5SVZ6 1142 aa15.27■□□□□ 0.04
HMGN1-216ENST00000486741 TMC6Q7Z403 805 aa15.27■□□□□ 0.04
HMGN1-216ENST00000486741 SMTNL1A8MU46 457 aa15.27■□□□□ 0.04
HMGN1-216ENST00000486741 PICALMQ13492 652 aa15.27■□□□□ 0.04
HMGN1-216ENST00000486741 SFPQP23246 707 aaKnown RBP eCLIP15.27■□□□□ 0.03
HMGN1-216ENST00000486741 FILIP1LQ4L180 1135 aa15.27■□□□□ 0.03
HMGN1-216ENST00000486741 TTLL11Q8NHH1 800 aa15.27■□□□□ 0.03
HMGN1-216ENST00000486741 CEP131Q9UPN4 1083 aa15.27■□□□□ 0.03
HMGN1-216ENST00000486741 A0A087WWV3 80 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 CCDC112Q8NEF3 446 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 USP28Q96RU2 1077 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 TAF6LQ9Y6J9 622 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 PTGS1P23219 599 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 TMX1Q9H3N1 280 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.26■□□□□ 0.036e-9■■■■■ 32.8
HMGN1-216ENST00000486741 SHPRHQ149N8 1683 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 TNS3Q68CZ2 1445 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 CCDC194A0A1B0GVG4 234 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 BAG3O95817 575 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 KAZALD1Q96I82 304 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 KCNJ14Q9UNX9 436 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 NCAPD2Q15021 1401 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 NR1I2O75469 434 aa15.26■□□□□ 0.03
HMGN1-216ENST00000486741 CDCA7Q9BWT1 371 aaPredicted RBP15.26■□□□□ 0.03
HMGN1-216ENST00000486741 TRAPPC3LQ5T215 181 aa15.25■□□□□ 0.03
HMGN1-216ENST00000486741 CRACR2BQ8N4Y2 399 aaPredicted RBP15.25■□□□□ 0.03
HMGN1-216ENST00000486741 SAP30BPQ9UHR5 308 aaKnown RBP15.25■□□□□ 0.03
HMGN1-216ENST00000486741 ADGRB2O60241 1585 aa15.25■□□□□ 0.03
HMGN1-216ENST00000486741 PDIA3P30101 505 aaKnown RBP15.25■□□□□ 0.03
HMGN1-216ENST00000486741 HIBADHP31937 336 aaKnown RBP15.25■□□□□ 0.03
HMGN1-216ENST00000486741 CHRNDQ07001 517 aa15.25■□□□□ 0.03
HMGN1-216ENST00000486741 TSPY3P0CV98 308 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 TSPY8P0CW00 308 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 SUSD4Q5VX71 490 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 USPL1Q5W0Q7 1092 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 PPFIBP1Q86W92 1011 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 NOC3LQ8WTT2 800 aaKnown RBP15.24■□□□□ 0.03
HMGN1-216ENST00000486741 GJB4Q9NTQ9 266 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 CTDP1Q9Y5B0 961 aaPredicted RBP15.24■□□□□ 0.03
HMGN1-216ENST00000486741 IL6STP40189 918 aaPredicted RBP15.24■□□□□ 0.03
HMGN1-216ENST00000486741 NYXQ9GZU5 481 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 CABP5Q9NP86 173 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 USP21Q9UK80 565 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 KIF20BQ96Q89 1820 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 MROH5Q6ZUA9 1318 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 ITSN1Q15811 1721 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 PRKAB2O43741 272 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 SCARF1Q14162 830 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 CCDC96Q2M329 555 aa15.24■□□□□ 0.03
HMGN1-216ENST00000486741 FOXO4P98177 505 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 NOLC1Q14978 699 aaKnown RBP eCLIP15.23■□□□□ 0.033e-16■□□□□ 10.2
HMGN1-216ENST00000486741 TMTC2Q8N394 836 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 INCENPQ9NQS7 918 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 SEC63Q9UGP8 760 aaKnown RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 USP32Q8NFA0 1604 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 KCNQ2O43526 872 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 LDHCP07864 332 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 GNAT2P19087 354 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 RPS8P62241 208 aaKnown RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 CNBD1Q8NA66 436 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 LLPHQ9BRT6 129 aaKnown RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 DACH1Q9UI36 760 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 V9GY48 417 aaPredicted RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 KRT18P05783 430 aaKnown RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 SPTY2D1Q68D10 685 aaPredicted RBP15.23■□□□□ 0.03
HMGN1-216ENST00000486741 KRT40Q6A162 431 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 IFNL3Q8IZI9 196 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 TNNT1P13805 278 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 DHX58Q96C10 678 aa15.23■□□□□ 0.03
HMGN1-216ENST00000486741 PFKFB2O60825 505 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 CIAO1O76071 339 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 LDHBP07195 334 aaKnown RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 NAP1L1P55209 391 aaKnown RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 ST5P78524 1137 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 FAM47AQ5JRC9 791 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 TOP1P11387 765 aaKnown RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 MCAMP43121 646 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 HEATR3Q7Z4Q2 680 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 SMARCE1Q969G3 411 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 MAGEC2Q9UBF1 373 aaPredicted RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 PTPN14Q15678 1187 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 ANO1Q5XXA6 986 aa15.22■□□□□ 0.03
HMGN1-216ENST00000486741 DIS3L2Q8IYB7 885 aaKnown RBP15.22■□□□□ 0.03
HMGN1-216ENST00000486741 TTC14Q96N46 770 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms