RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 TMEM229AB2RXF0 380 aa9.14□□□□□ -0.95
TMEM39A-209ENST00000486235 CHRNA4P43681 627 aa9.14□□□□□ -0.95
TMEM39A-209ENST00000486235 SEMA3FQ13275 785 aa9.14□□□□□ -0.95
TMEM39A-209ENST00000486235 FCHSD1Q86WN1 690 aa9.14□□□□□ -0.95
TMEM39A-209ENST00000486235 SIN3AQ96ST3 1273 aa9.14□□□□□ -0.95
TMEM39A-209ENST00000486235 SBNO2Q9Y2G9 1366 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 PIK3R2O00459 728 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 ADH6P28332 368 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 NEUROD1Q13562 356 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 MAP7D1Q3KQU3 841 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 ZIC5Q96T25 663 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 GJA3Q9Y6H8 435 aa9.13□□□□□ -0.95
TMEM39A-209ENST00000486235 MON2Q7Z3U7 1717 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 A6NJY4 79 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 PIK3CDO00329 1044 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 YBX3P16989 372 aaKnown RBP eCLIP9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 TATP17735 454 aaPredicted RBP9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 MSL1Q68DK7 614 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 HDGFL2Q7Z4V5 671 aaPredicted RBP9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 ZNF295-AS1Q8N0V1 137 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 Q8N3U1 123 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 PRR12Q9ULL5 1215 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 IQSEC3Q9UPP2 1182 aaPredicted RBP9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 CD163L1Q9NR16 1453 aa9.12□□□□□ -0.95
TMEM39A-209ENST00000486235 CDK2AP1O14519 115 aa9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 BICDL1Q6ZP65 573 aa9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 SLC12A5Q9H2X9 1139 aa9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 NOP53Q9NZM5 478 aaKnown RBP9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 CCNL1Q9UK58 526 aaPredicted RBP9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 LTN1O94822 1766 aa9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 SHANK3Q9BYB0 1731 aa9.11□□□□□ -0.95
TMEM39A-209ENST00000486235 GRIN3BO60391 1043 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 DOC2BQ14184 412 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 COL23A1Q86Y22 540 aaPredicted RBP9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 IP6K1Q92551 441 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 SLC4A9Q96Q91 983 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 NSD2O96028 1365 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 ANKRD36BQ8N2N9 1353 aa9.1□□□□□ -0.95
TMEM39A-209ENST00000486235 EDC4Q6P2E9 1401 aaKnown RBP9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 ATP10DQ9P241 1426 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 FBLN1P23142 703 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 WASHC4Q2M389 1173 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 TRIM11Q96F44 468 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 PLVAPQ9BX97 442 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 PCDHGA11Q9Y5H2 935 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 TUBGCP6Q96RT7 1819 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 USP54Q70EL1 1684 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 A0A1W2PP64 1363 aa9.09□□□□□ -0.95
TMEM39A-209ENST00000486235 QSER1Q2KHR3 1735 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 TXLNAP40222 546 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 AMPHP49418 695 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 MTFR1Q15390 333 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 ZCRB1Q8TBF4 217 aaKnown RBP9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 ZNF526Q8TF50 670 aaPredicted RBP9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 CARD11Q9BXL7 1154 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 TERF2IPQ9NYB0 399 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 ZDHHC3Q9NYG2 299 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 DOT1LQ8TEK3 1739 aa9.08□□□□□ -0.96
TMEM39A-209ENST00000486235 MAP3K19Q56UN5 1328 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 MEGF6O75095 1541 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 ZNF468Q5VIY5 522 aaPredicted RBP9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 SEMA6BQ9H3T3 888 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 MARK1Q9P0L2 795 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 WWC3Q9ULE0 1092 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 COL24A1Q17RW2 1714 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 USP47Q96K76 1375 aa9.07□□□□□ -0.96
TMEM39A-209ENST00000486235 FAM157BP0CG42 384 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 SKIP12755 728 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 HOXC9P31274 260 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 TBCELQ5QJ74 424 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 LRRC69Q6ZNQ3 347 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 USHBP1Q8N6Y0 703 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 COG3Q96JB2 828 aa9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 AVENQ9NQS1 362 aaPredicted RBP9.06□□□□□ -0.96
TMEM39A-209ENST00000486235 LY75O60449 1722 aa9.05□□□□□ -0.96
TMEM39A-209ENST00000486235 ZDHHC1Q8WTX9 485 aa9.05□□□□□ -0.96
TMEM39A-209ENST00000486235 FAM208AQ9UK61 1670 aaKnown RBP9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 HSPA6P17066 643 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 ITGB7P26010 798 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 GTF2IP78347 998 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 RRS1Q15050 365 aaKnown RBP9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 EML3Q32P44 896 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 NBPF6Q5VWK0 638 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 SMIM5Q71RC9 77 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 SYT9Q86SS6 491 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 NBPF4Q96M43 638 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 CD2APQ9Y5K6 639 aa9.04□□□□□ -0.96
TMEM39A-209ENST00000486235 PALLDQ8WX93 1383 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 BACH1O14867 736 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 EFSO43281 561 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 MPRIPQ6WCQ1 1025 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 RAPGEF4Q8WZA2 1011 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 ZNF358Q9NW07 568 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 SCHIP1Q9P0W5 487 aaPredicted RBP9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 ZNF232Q9UNY5 417 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 NOD1Q9Y239 953 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 RGPD2P0DJD1 1756 aa9.03□□□□□ -0.96
TMEM39A-209ENST00000486235 ADCY9O60503 1353 aa9.02□□□□□ -0.97
TMEM39A-209ENST00000486235 ALAS2P22557 587 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms