RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	PLIN1	O60240	522 aa		13.4	□□□□□ -0.26
HMGN1-215	ENST00000485550	GTF2I	P78347	998 aa		13.4	□□□□□ -0.26
HMGN1-215	ENST00000485550	ZNF333	Q96JL9	665 aa		13.4	□□□□□ -0.26
HMGN1-215	ENST00000485550	PTPN18	Q99952	460 aa		13.4	□□□□□ -0.26
HMGN1-215	ENST00000485550		H0YGN5	161 aa		13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	PPP1R12B	O60237	982 aa	Predicted RBP	13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	DLGAP5	Q15398	846 aa		13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	SLC4A8	Q2Y0W8	1093 aa		13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	OTUD7B	Q6GQQ9	843 aa		13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	PTCH2	Q9Y6C5	1203 aa		13.39	□□□□□ -0.27
HMGN1-215	ENST00000485550	CLRN2	A0PK11	232 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550		F8W031	263 aa	Predicted RBP	13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	GRM8	O00222	908 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	CCDC57	Q2TAC2	916 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	SLC9C1	Q4G0N8	1177 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	TAF7L	Q5H9L4	462 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	SRCIN1	Q9C0H9	1055 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	CD209	Q9NNX6	404 aa		13.38	□□□□□ -0.27
HMGN1-215	ENST00000485550	USP2	O75604	605 aa	Predicted RBP	13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	MMP14	P50281	582 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	LDHAL6A	Q6ZMR3	332 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	OTUD5	Q96G74	571 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	VEZT	Q9HBM0	779 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	CNNM1	Q9NRU3	951 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	JAG2	Q9Y219	1238 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	AOX1	Q06278	1338 aa		13.37	□□□□□ -0.27
HMGN1-215	ENST00000485550	IREB2	P48200	963 aa	Known RBP	13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	SUPT20HL1	Q3ZLR7	823 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	NBPF11	Q86T75	865 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	CERS5	Q8N5B7	392 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	SUCLG2	Q96I99	432 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	ELP3	Q9H9T3	547 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	ZNF521	Q96K83	1311 aa		13.36	□□□□□ -0.27
HMGN1-215	ENST00000485550	ALDH1L1	O75891	902 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	TAF1C	Q15572	869 aa	Predicted RBP	13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	CFAP100	Q494V2	611 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	ANKRD13A	Q8IZ07	590 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	MRPL50	Q8N5N7	158 aa	Known RBP	13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	SH3TC2	Q8TF17	1288 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	OPTN	Q96CV9	577 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	PRMT6	Q96LA8	375 aa	Predicted RBP	13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	PUS3	Q9BZE2	481 aa	Known RBP	13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	PPP2R3B	Q9Y5P8	575 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	ARAP2	Q8WZ64	1704 aa		13.35	□□□□□ -0.27
HMGN1-215	ENST00000485550	TESPA1	A2RU30	521 aa	Predicted RBP	13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	UNCX	A6NJT0	531 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	DLL1	O00548	723 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	MYO1B	O43795	1136 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	ZNF804A	Q7Z570	1209 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	MTMR14	Q8NCE2	650 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	KAZALD1	Q96I82	304 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	MS4A4A	Q96JQ5	239 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	RBM27	Q9P2N5	1060 aa	Known RBP	13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	IRS2	Q9Y4H2	1338 aa		13.34	□□□□□ -0.27
HMGN1-215	ENST00000485550	ECM2	O94769	699 aa	Predicted RBP	13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	RBM5	P52756	815 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	RASA3	Q14644	834 aa		13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	C15orf52	Q6ZUT6	534 aa	Known RBP	13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	ARHGAP39	Q9C0H5	1083 aa		13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	ZFYVE28	Q9HCC9	887 aa		13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	MGAM	O43451	1857 aa		13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	AK9	Q5TCS8	1911 aa		13.33	□□□□□ -0.28
HMGN1-215	ENST00000485550	CCL15-CCL14	A0A0B4J2E2	113 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550		E9PSI1	815 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	IL1R1	P14778	569 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	ARHGEF6	Q15052	776 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	CCL15	Q16663	113 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	FAM43A	Q8N2R8	423 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	SLC17A8	Q8NDX2	589 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	BRI3BP	Q8WY22	251 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	SSH1	Q8WYL5	1049 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	DPF3	Q92784	378 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	CDCA7L	Q96GN5	454 aa		13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	BICC1	Q9H694	974 aa	Known RBP	13.32	□□□□□ -0.28
HMGN1-215	ENST00000485550	RANBP2	P49792	3224 aa	Known RBP	13.31	□□□□□ -0.28
HMGN1-215	ENST00000485550	GYG1	P46976	350 aa		13.31	□□□□□ -0.28
HMGN1-215	ENST00000485550	SLFN5	Q08AF3	891 aa		13.31	□□□□□ -0.28
HMGN1-215	ENST00000485550	CDAN1	Q8IWY9	1227 aa		13.31	□□□□□ -0.28
HMGN1-215	ENST00000485550	CACNA1F	O60840	1977 aa		13.31	□□□□□ -0.28
HMGN1-215	ENST00000485550	CUL9	Q8IWT3	2517 aa		13.3	□□□□□ -0.28
HMGN1-215	ENST00000485550	MTFR1	Q15390	333 aa		13.3	□□□□□ -0.28
HMGN1-215	ENST00000485550	LRRC24	Q50LG9	513 aa		13.3	□□□□□ -0.28
HMGN1-215	ENST00000485550	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.3	□□□□□ -0.28
HMGN1-215	ENST00000485550	KLHDC4	Q8TBB5	520 aa		13.3	□□□□□ -0.28
HMGN1-215	ENST00000485550	ALPK3	Q96L96	1907 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	HIBADH	P31937	336 aa	Known RBP	13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	GTF2A2	P52657	109 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	VGLL4	Q14135	290 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	UBE4A	Q14139	1066 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	ANKRD44	Q8N8A2	993 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	SHISA4	Q96DD7	197 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	FAM84B	Q96KN1	310 aa	Predicted RBP	13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	RIPOR2	Q9Y4F9	1068 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	UTY	O14607	1347 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	DOCK3	Q8IZD9	2030 aa		13.29	□□□□□ -0.28
HMGN1-215	ENST00000485550	COL6A3	P12111	3177 aa		13.28	□□□□□ -0.28

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