RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 SMARCC2Q8TAQ2 1214 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 AFAP1L1Q8TED9 768 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 JAKMIP2Q96AA8 810 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 KCNK9Q9NPC2 374 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 FAM114A2Q9NRY5 505 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 RTL9Q8NET4 1388 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 PRAG1Q86YV5 1406 aa9.96□□□□□ -0.82
SYNE1-224ENST00000478916 YTHDC2Q9H6S0 1430 aaKnown RBP9.96□□□□□ -0.82
SYNE1-224ENST00000478916 SYKP43405 635 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 SPAG1Q07617 926 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 KIF5AQ12840 1032 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 SOS1Q07889 1333 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-224ENST00000478916 CALM1P0DP23 149 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 CALM2P0DP24 149 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 CALM3P0DP25 149 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 MRPS9P82933 396 aaKnown RBP9.95□□□□□ -0.82
SYNE1-224ENST00000478916 FAM200AQ8TCP9 573 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 MTRF1LQ9UGC7 380 aaKnown RBP9.95□□□□□ -0.82
SYNE1-224ENST00000478916 SHANK2Q9UPX8 1470 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 TTC36A6NLP5 189 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 RTN1Q16799 776 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 MCMDC2Q4G0Z9 681 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 CFAP157Q5JU67 520 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 C20orf194Q5TEA3 1177 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 TBX22Q9Y458 520 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 INPP5BP32019 993 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 ATP2A2P16615 1042 aaKnown RBP9.95□□□□□ -0.82
SYNE1-224ENST00000478916 LINS1Q8NG48 757 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 SLC9C2Q5TAH2 1124 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 TBC1D9Q6ZT07 1266 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 CNBD1Q8NA66 436 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 KIAA1524Q8TCG1 905 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 PPP1R12CQ9BZL4 782 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 ODF2LQ9ULJ1 636 aa9.95□□□□□ -0.82
SYNE1-224ENST00000478916 NSFL1CQ9UNZ2 370 aaKnown RBP9.95□□□□□ -0.82
SYNE1-224ENST00000478916 KLF18A0A0U1RQI7 1052 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 HEATR3Q7Z4Q2 680 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 IQSEC3Q9UPP2 1182 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 USH1CQ9Y6N9 552 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 MTHFSDQ2M296 383 aaKnown RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 TRMT1LQ7Z2T5 733 aaKnown RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 IP6K1Q92551 441 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 SPAG5Q96R06 1193 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 ATP10AO60312 1499 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 PHACTR2O75167 634 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 XRCC6P12956 609 aaKnown RBP eCLIP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 PDE1CQ14123 709 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 SH2D4BQ5SQS7 431 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 SH2D4AQ9H788 454 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 PAG1Q9NWQ8 432 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 CCNL1Q9UK58 526 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 LDHBP07195 334 aaKnown RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 KCNA6P17658 529 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 PLS1Q14651 629 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 FMNL3Q8IVF7 1028 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 ZSCAN22P10073 491 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 NCBP1Q09161 790 aaKnown RBP9.94□□□□□ -0.82
SYNE1-224ENST00000478916 ERCC6LQ2NKX8 1250 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 TSGA10Q9BZW7 698 aa9.94□□□□□ -0.82
SYNE1-224ENST00000478916 SMIM23A6NLE4 172 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 VIMP08670 466 aaKnown RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 IFT81Q8WYA0 676 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 IGSF3O75054 1194 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 HOXC9P31274 260 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 NAPAP54920 295 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 PARP10Q53GL7 1025 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 SYNCQ9H7C4 482 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RHOXF2BP0C7M4 288 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 CA8P35219 290 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 ATP8B2P98198 1209 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 GTF3C6Q969F1 213 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RRP36Q96EU6 259 aaKnown RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 CAPZA3Q96KX2 299 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RHOXF2Q9BQY4 288 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 NUF2Q9BZD4 464 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 C6orf50Q9HD87 102 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 NKIRAS1Q9NYS0 192 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 TXNDC16Q9P2K2 825 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 ARHGEF10O15013 1369 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 SPDYE3A6NKU9 549 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 FBLN1P23142 703 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 PTGS1P23219 599 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RRAGBQ5VZM2 374 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 HDAC1Q13547 482 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 PHLDB2Q86SQ0 1253 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 KCNG4Q8TDN1 519 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RNMTO43148 476 aaKnown RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 GIGYF1O75420 1035 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 ARHGAP25P42331 645 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 SH3BGRP55822 239 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 TNNC1P63316 161 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 UBLCP1Q8WVY7 318 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-224ENST00000478916 TTC41PQ6P2S7 1318 aa9.93□□□□□ -0.82
SYNE1-224ENST00000478916 MEIS3Q99687 375 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 POLKQ9UBT6 870 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 WDR62O43379 1518 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 FYB2Q5VWT5 728 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 AOPEPQ8N6M6 819 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 PANK2Q9BZ23 570 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms