RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SPDYE6P0CI01 402 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 TRIM32Q13049 653 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 SUPT20HL1Q3ZLR7 823 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 COPS6Q7L5N1 327 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 MTMR14Q8NCE2 650 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 XAGE3Q8WTP9 111 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 FBXW7Q969H0 707 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 ASB2Q96Q27 587 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 ISCA1Q9BUE6 129 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 NBPF3Q9H094 633 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.42□□□□□ -1.38
USP4-209ENST00000475873 EPHX3Q9H6B9 360 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 XDHP47989 1333 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 MYO3BQ8WXR4 1341 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 USP34Q70CQ2 3546 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 ARAP2Q8WZ64 1704 aa6.42□□□□□ -1.38
USP4-209ENST00000475873 MAST2Q6P0Q8 1798 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 CETPP11597 493 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 COL6A1P12109 1028 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 HOXD10P28358 340 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 MRE11P49959 708 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 MAP3K9P80192 1104 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 AIMP1Q12904 312 aaKnown RBP6.41□□□□□ -1.38
USP4-209ENST00000475873 GRIN2CQ14957 1233 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 DLGAP5Q15398 846 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 SHHQ15465 462 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 ANKLE1Q8NAG6 615 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 HELBQ8NG08 1087 aaPredicted RBP6.41□□□□□ -1.38
USP4-209ENST00000475873 PXYLP1Q8TE99 480 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 KHSRPQ92945 711 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP4-209ENST00000475873 C11orf49Q9H6J7 331 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 VEZTQ9HBM0 779 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 SPEF2Q9C093 1822 aa6.41□□□□□ -1.38
USP4-209ENST00000475873 DLG5Q8TDM6 1919 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 ATP5J2-PTCD1G3V325 749 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 PDHXO00330 501 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 IRS4O14654 1257 aaPredicted RBP6.4□□□□□ -1.38
USP4-209ENST00000475873 CYP2C8P10632 490 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 ATP2B4P23634 1241 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 GTF2IP78347 998 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 CFAP100Q494V2 611 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 TTLL5Q6EMB2 1281 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 POTEEQ6S8J3 1075 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.4□□□□□ -1.38
USP4-209ENST00000475873 ATXN2LQ8WWM7 1075 aaKnown RBP6.4□□□□□ -1.38
USP4-209ENST00000475873 RTF1Q92541 710 aaKnown RBP6.4□□□□□ -1.38
USP4-209ENST00000475873 CCDC85AQ96PX6 553 aaPredicted RBP6.4□□□□□ -1.38
USP4-209ENST00000475873 C1QTNF1Q9BXJ1 281 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 TMEM39BQ9GZU3 492 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 OGDHLQ9ULD0 1010 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 HCN4Q9Y3Q4 1203 aa6.4□□□□□ -1.38
USP4-209ENST00000475873 CAPN2P17655 700 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 EIF2S2P20042 333 aaKnown RBP6.39□□□□□ -1.39
USP4-209ENST00000475873 FCGRTP55899 365 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 SNAPC2Q13487 334 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 IRF5Q13568 498 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 HSP90AB3PQ58FF7 597 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 GPAT2Q6NUI2 795 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 ANKRD23Q86SG2 305 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 ERO1BQ86YB8 467 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 ZKSCAN4Q969J2 545 aaPredicted RBP6.39□□□□□ -1.39
USP4-209ENST00000475873 P2RX7Q99572 595 aaKnown RBP6.39□□□□□ -1.39
USP4-209ENST00000475873 COA1Q9GZY4 146 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 MINPP1Q9UNW1 487 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 CACNA1BQ00975 2339 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 SPTBN4Q9H254 2564 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 PLXNB2O15031 1838 aa6.39□□□□□ -1.39
USP4-209ENST00000475873 DCHS1Q96JQ0 3298 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 C5orf42Q9H799 3197 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 FAM86C2PA6NEL3 165 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 F8W031 263 aaPredicted RBP6.38□□□□□ -1.39
USP4-209ENST00000475873 SNAP23O00161 211 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 HTATSF1O43719 755 aaKnown RBP6.38□□□□□ -1.39
USP4-209ENST00000475873 BMP1P13497 986 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 MMP14P50281 582 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 SMAD3P84022 425 aaKnown RBP6.38□□□□□ -1.39
USP4-209ENST00000475873 PPIL2Q13356 520 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 SPDYE2Q495Y8 402 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 JARID2Q92833 1246 aaPredicted RBP6.38□□□□□ -1.39
USP4-209ENST00000475873 THEGQ9P2T0 379 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 ZNF70Q9UC06 446 aaPredicted RBP6.38□□□□□ -1.39
USP4-209ENST00000475873 KNSTRNQ9Y448 316 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 CSADQ9Y600 493 aa6.38□□□□□ -1.39
USP4-209ENST00000475873 AK9Q5TCS8 1911 aa6.37□□□□□ -1.39
USP4-209ENST00000475873 PER1O15534 1290 aaPredicted RBP6.37□□□□□ -1.39
USP4-209ENST00000475873 CCT4P50991 539 aaKnown RBP6.37□□□□□ -1.39
USP4-209ENST00000475873 ZBTB38Q8NAP3 1195 aaPredicted RBP6.37□□□□□ -1.39
USP4-209ENST00000475873 PPM1EQ8WY54 764 aa6.37□□□□□ -1.39
USP4-209ENST00000475873 TDRD3Q9H7E2 651 aaKnown RBP6.37□□□□□ -1.39
USP4-209ENST00000475873 KCNH4Q9UQ05 1017 aa6.37□□□□□ -1.39
USP4-209ENST00000475873 ZNF318Q5VUA4 2279 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 TCP10L2B9ZVM9 353 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 WDHD1O75717 1129 aaPredicted RBP6.36□□□□□ -1.39
USP4-209ENST00000475873 INPP5BP32019 993 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 MRPS5P82675 430 aaKnown RBP6.36□□□□□ -1.39
USP4-209ENST00000475873 ADGRE1Q14246 886 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 KRT24Q2M2I5 525 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 TMEM31Q5JXX7 168 aa6.36□□□□□ -1.39
USP4-209ENST00000475873 CC2D1BQ5T0F9 858 aaKnown RBP6.36□□□□□ -1.39
USP4-209ENST00000475873 MAP3K21Q5TCX8 1036 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms