RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ZNF532Q9HCE3 1301 aa12.01□□□□□ -0.49
SF3A1-207ENST00000471342 GPR75-ASB3A0A0A6YYF3 556 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 PPP4CP60510 307 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 EVX2Q03828 476 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 VPS53Q5VIR6 699 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 NKX2-3Q8TAU0 364 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 RILPL2Q969X0 211 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 GPATCH3Q96I76 525 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 ESYT1Q9BSJ8 1104 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 LSG1Q9H089 658 aaKnown RBP12□□□□□ -0.49
SF3A1-207ENST00000471342 PGAP2Q9UHJ9 254 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 SUGT1Q9Y2Z0 365 aa12□□□□□ -0.49
SF3A1-207ENST00000471342 RPAP1Q9BWH6 1393 aaPredicted RBP12□□□□□ -0.49
SF3A1-207ENST00000471342 IGSF3O75054 1194 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 HIRAP54198 1017 aaPredicted RBP11.99□□□□□ -0.49
SF3A1-207ENST00000471342 DYNLL1P63167 89 aaKnown RBP11.99□□□□□ -0.49
SF3A1-207ENST00000471342 PTH1RQ03431 593 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 SLC9C2Q5TAH2 1124 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 VPS37DQ86XT2 251 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 NIM1KQ8IY84 436 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 CNTROBQ8N137 903 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 MAGEB6Q8N7X4 407 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 STRBPQ96SI9 672 aaKnown RBP11.99□□□□□ -0.49
SF3A1-207ENST00000471342 DAGLAQ9Y4D2 1042 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 TAF6LQ9Y6J9 622 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 ADAMTSL1Q8N6G6 1762 aa11.99□□□□□ -0.49
SF3A1-207ENST00000471342 TRIM6-TRIM34B2RNG4 842 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 PRKAB2O43741 272 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 GRIN3BO60391 1043 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 CDC45O75419 566 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 IDH1O75874 414 aaKnown RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 TTF1Q15361 905 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 GPR162Q16538 588 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 CIAPIN1Q6FI81 312 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 LCORLQ8N3X6 602 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 MTMR14Q8NCE2 650 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 AGBL3Q8NEM8 1001 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 TBC1D22AQ8WUA7 517 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 APPBP2Q92624 585 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 DPF2Q92785 391 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 KCNB2Q92953 911 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 IL17RAQ96F46 866 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 PRMT6Q96LA8 375 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 TMX4Q9H1E5 349 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 EPB41L4AQ9HCS5 686 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 RNF181Q9P0P0 153 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 ABCF2Q9UG63 623 aa11.98□□□□□ -0.49
SF3A1-207ENST00000471342 DICER1Q9UPY3 1922 aaKnown RBP11.98□□□□□ -0.49
SF3A1-207ENST00000471342 ASTN2O75129 1339 aaPredicted RBP11.97□□□□□ -0.49
SF3A1-207ENST00000471342 GSG1L2A8MUP6 293 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 DDNO94850 711 aaPredicted RBP11.97□□□□□ -0.49
SF3A1-207ENST00000471342 GMPSP49915 693 aaPredicted RBP11.97□□□□□ -0.49
SF3A1-207ENST00000471342 HDLBPQ00341 1268 aaKnown RBP11.97□□□□□ -0.49
SF3A1-207ENST00000471342 HHIPL2Q6UWX4 724 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 ERICH6Q7L0X2 663 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 KIAA0825Q8IV33 1275 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 L3MBTL3Q96JM7 780 aaPredicted RBP11.97□□□□□ -0.49
SF3A1-207ENST00000471342 ZDHHC15Q96MV8 337 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 KIF2CQ99661 725 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 FSD1Q9BTV5 496 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 NBPF3Q9H094 633 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 HELLSQ9NRZ9 838 aa11.97□□□□□ -0.49
SF3A1-207ENST00000471342 MROH7-TTC4A0A0A0MT08 1334 aa11.96□□□□□ -0.49
SF3A1-207ENST00000471342 WDHD1O75717 1129 aaPredicted RBP11.96□□□□□ -0.49
SF3A1-207ENST00000471342 LDHBP07195 334 aaKnown RBP11.96□□□□□ -0.49
SF3A1-207ENST00000471342 ZFYP08048 801 aaPredicted RBP11.96□□□□□ -0.49
SF3A1-207ENST00000471342 CYP7A1P22680 504 aa11.96□□□□□ -0.49
SF3A1-207ENST00000471342 CRKP46108 304 aa11.96□□□□□ -0.49
SF3A1-207ENST00000471342 CWC27Q6UX04 472 aaKnown RBP11.96□□□□□ -0.49
SF3A1-207ENST00000471342 USP26Q9BXU7 913 aa11.96□□□□□ -0.49
SF3A1-207ENST00000471342 DDX4Q9NQI0 724 aaKnown RBP11.96□□□□□ -0.49
SF3A1-207ENST00000471342 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.49
SF3A1-207ENST00000471342 GPAA1O43292 621 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 EPS15P42566 896 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 MAP3K12Q12852 859 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 MCMDC2Q4G0Z9 681 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 CDC42EP5Q6NZY7 148 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 SH3BP5LQ7L8J4 393 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 ZFPM1Q8IX07 1006 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 PELP1Q8IZL8 1130 aaKnown RBP11.95□□□□□ -0.5
SF3A1-207ENST00000471342 GPC2Q8N158 579 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 SH3RF3Q8TEJ3 882 aaPredicted RBP11.95□□□□□ -0.5
SF3A1-207ENST00000471342 MAP4K1Q92918 833 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 ARMT1Q9H993 441 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 GPRC5DQ9NZD1 345 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 SERPINA10Q9UK55 444 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 TTF2Q9UNY4 1162 aaKnown RBP11.95□□□□□ -0.5
SF3A1-207ENST00000471342 CCDC88AQ3V6T2 1871 aa11.95□□□□□ -0.5
SF3A1-207ENST00000471342 SPDYE2BA6NHP3 402 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 F8W031 263 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-207ENST00000471342 SPDYE6P0CI01 402 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 SLURP2P0DP57 97 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 HSPD1P10809 573 aaKnown RBP11.94□□□□□ -0.5
SF3A1-207ENST00000471342 NFIAQ12857 509 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 NECTIN1Q15223 517 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 NAA16Q6N069 864 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-207ENST00000471342 TMED8Q6PL24 325 aaPredicted RBP11.94□□□□□ -0.5
SF3A1-207ENST00000471342 MIGA1Q8NAN2 632 aa11.94□□□□□ -0.5
SF3A1-207ENST00000471342 TRPM4Q8TD43 1214 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms