RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ERICH6Q7L0X2 663 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 SLC17A8Q8NDX2 589 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 ARMC5Q96C12 935 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 CCDC85AQ96PX6 553 aaPredicted RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 PLEKHF1Q96S99 279 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 PTPN18Q99952 460 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 ZC3H12CQ9C0D7 883 aaKnown RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 FAM198AQ9UFP1 575 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 ANGEL1Q9UNK9 670 aaKnown RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 SSC5DA1L4H1 1573 aa6.96□□□□□ -1.29
PTPN4-209ENST00000469511 ALPK3Q96L96 1907 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ZNF609O15014 1411 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 TRIM6-TRIM34B2RNG4 842 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 SOX1O00570 391 aaPredicted RBP6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ST18O60284 1047 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 MS4A1P11836 297 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 CRHR2Q13324 411 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 INTS3Q68E01 1043 aaKnown RBP6.96□□□□□ -1.3
PTPN4-209ENST00000469511 TXNRD3Q86VQ6 643 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 AGBL3Q8NEM8 1001 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 PNISRQ8TF01 805 aaKnown RBP6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ZNF333Q96JL9 665 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 KCNK17Q96T54 332 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 EYA3Q99504 573 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ISCA1Q9BUE6 129 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 PCGF6Q9BYE7 350 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ECM29Q5VYK3 1845 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 AOX1Q06278 1338 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 ERBB4Q15303 1308 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 PITPNM2Q9BZ72 1349 aa6.96□□□□□ -1.3
PTPN4-209ENST00000469511 IRS4O14654 1257 aaPredicted RBP6.95□□□□□ -1.3
PTPN4-209ENST00000469511 SREBF2Q12772 1141 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 TMC4Q7Z404 712 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 WNK4Q96J92 1243 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 CFAP53Q96M91 514 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 EFCC1Q9HA90 598 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 GOPCQ9HD26 462 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 FAM217BQ9NTX9 383 aaPredicted RBP6.95□□□□□ -1.3
PTPN4-209ENST00000469511 PODXL2Q9NZ53 605 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 ANKIB1Q9P2G1 1089 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 TSPYL4Q9UJ04 414 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 NUDCQ9Y266 331 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 PTCH2Q9Y6C5 1203 aa6.95□□□□□ -1.3
PTPN4-209ENST00000469511 USP17L3A6NCW0 530 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 USP17L4A6NCW7 530 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 KLRK1P26718 216 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 SSTR3P32745 418 aaPredicted RBP6.94□□□□□ -1.3
PTPN4-209ENST00000469511 NFE2L2Q16236 605 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 HSP90AB3PQ58FF7 597 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 VARS2Q5ST30 1063 aaKnown RBP6.94□□□□□ -1.3
PTPN4-209ENST00000469511 DACT2Q5SW24 774 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 USP17L1Q7RTZ2 530 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 PACS2Q86VP3 889 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 SH3TC2Q8TF17 1288 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 SHISA4Q96DD7 197 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 LRCH3Q96II8 777 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 ARHGAP39Q9C0H5 1083 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 CHPF2Q9P2E5 772 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 GGA1Q9UJY5 639 aa6.94□□□□□ -1.3
PTPN4-209ENST00000469511 RANBP2P49792 3224 aaKnown RBP6.93□□□□□ -1.3
PTPN4-209ENST00000469511 MANSC4A6NHS7 340 aaPredicted RBP6.93□□□□□ -1.3
PTPN4-209ENST00000469511 SP3Q02447 781 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 MTFR1Q15390 333 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 ARMC9Q7Z3E5 817 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 KIAA0825Q8IV33 1275 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 CDAN1Q8IWY9 1227 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 TATDN2Q93075 761 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 SLC10A4Q96EP9 437 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 ERO1AQ96HE7 468 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 ZBED3Q96IU2 234 aaPredicted RBP6.93□□□□□ -1.3
PTPN4-209ENST00000469511 ZBED2Q9BTP6 218 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 SLC4A5Q9BY07 1137 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 PRO3102Q9H379 93 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 MYH3P11055 1940 aa6.93□□□□□ -1.3
PTPN4-209ENST00000469511 RCCD1A6NED2 376 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 ARHGAP33O14559 1287 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 USP2O75604 605 aaPredicted RBP6.92□□□□□ -1.3
PTPN4-209ENST00000469511 ALDH1A1P00352 501 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 CTGFP29279 349 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 PBX2P40425 430 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 EMP3P54852 163 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 SLC4A8Q2Y0W8 1093 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 NBPF12Q5TAG4 269 aaPredicted RBP6.92□□□□□ -1.3
PTPN4-209ENST00000469511 ANKRD13DQ6ZTN6 518 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 NUDT18Q6ZVK8 323 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 PLBD2Q8NHP8 589 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 DOCK3Q8IZD9 2030 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 COL6A3P12111 3177 aa6.92□□□□□ -1.3
PTPN4-209ENST00000469511 CLRN2A0PK11 232 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 C3orf80F5H4A9 247 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 SNAP23O00161 211 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 DNAJB2P25686 324 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 NF2P35240 595 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 MAP3K11Q16584 847 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 PROX2Q3B8N5 592 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 POTEEQ6S8J3 1075 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 PODNQ7Z5L7 613 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 FAM43AQ8N2R8 423 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 CERS5Q8N5B7 392 aa6.91□□□□□ -1.3
PTPN4-209ENST00000469511 NLRP7Q8WX94 980 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms