RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 AIDAQ96BJ3 306 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 TMEM87BQ96K49 555 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 SCAND2PQ9GZW5 306 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 GZF1Q9H116 711 aaPredicted RBP8.98□□□□□ -0.97
COL6A3-208ENST00000468792 CNNM2Q9H8M5 875 aa8.98□□□□□ -0.97
COL6A3-208ENST00000468792 FAM177BA6PVY3 158 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 LIFRP42702 1097 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 BCAMP50895 628 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 RCAN1P53805 252 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 KRT85P78386 507 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 TRDNQ13061 729 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 TTLL5Q6EMB2 1281 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 C3orf67Q6ZVT6 689 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 RALYLQ86SE5 291 aaKnown RBP8.97□□□□□ -0.97
COL6A3-208ENST00000468792 SGMS1Q86VZ5 419 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 NSUN7Q8NE18 718 aaKnown RBP8.97□□□□□ -0.97
COL6A3-208ENST00000468792 SPOCK2Q92563 424 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 FAM84BQ96KN1 310 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-208ENST00000468792 LARP6Q9BRS8 491 aaKnown RBP8.97□□□□□ -0.97
COL6A3-208ENST00000468792 NACAP1Q9BZK3 213 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 QTRT2Q9H974 415 aaKnown RBP8.97□□□□□ -0.97
COL6A3-208ENST00000468792 ANAPC4Q9UJX5 808 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 WWC3Q9ULE0 1092 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 NID2Q14112 1375 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 C4AP0C0L4 1744 aa8.97□□□□□ -0.97
COL6A3-208ENST00000468792 CASZ1Q86V15 1759 aa8.96□□□□□ -0.97
COL6A3-208ENST00000468792 KLRG2A4D1S0 409 aaPredicted RBP8.96□□□□□ -0.98
COL6A3-208ENST00000468792 PRC1O43663 620 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 CACNB1Q02641 598 aaPredicted RBP8.96□□□□□ -0.98
COL6A3-208ENST00000468792 CRY2Q49AN0 593 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 CAVIN1Q6NZI2 390 aaKnown RBP8.96□□□□□ -0.98
COL6A3-208ENST00000468792 LRSAM1Q6UWE0 723 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 GAS2L3Q86XJ1 694 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 IFNL3Q8IZI9 196 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 MAGEB6Q8N7X4 407 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 CELF1Q92879 486 aaKnown RBP8.96□□□□□ -0.98
COL6A3-208ENST00000468792 TCEANC2Q96MN5 208 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 KRT23Q9C075 422 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 SRP68Q9UHB9 627 aaKnown RBP8.96□□□□□ -0.98
COL6A3-208ENST00000468792 LEMD3Q9Y2U8 911 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 IRS2Q9Y4H2 1338 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 TIAM2Q8IVF5 1701 aa8.96□□□□□ -0.98
COL6A3-208ENST00000468792 GSG1L2A8MUP6 293 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 CTDNEP1O95476 244 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 ANTXR2P58335 489 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 APOBRQ0VD83 1088 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 GRAPQ13588 217 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 KRT27Q7Z3Y8 459 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 TMC4Q7Z404 712 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 TMTC2Q8N394 836 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 FAM184AQ8NB25 1140 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 GRAPLQ8TC17 118 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-208ENST00000468792 STAG1Q8WVM7 1258 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 BRIP1Q9BX63 1249 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 NBPF3Q9H094 633 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 RNF41Q9H4P4 317 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-208ENST00000468792 LRRC4BQ9NT99 713 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 TMEM63CQ9P1W3 806 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 LRP2BPQ9P2M1 347 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 CFAP45Q9UL16 551 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 ANGEL1Q9UNK9 670 aaKnown RBP8.95□□□□□ -0.98
COL6A3-208ENST00000468792 SSUH2Q9Y2M2 353 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 UBR3Q6ZT12 1888 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 MYO5AQ9Y4I1 1855 aaKnown RBP8.95□□□□□ -0.98
COL6A3-208ENST00000468792 TCHHQ07283 1943 aa8.95□□□□□ -0.98
COL6A3-208ENST00000468792 VPS37CA5D8V6 355 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-208ENST00000468792 SH2B2O14492 632 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-208ENST00000468792 PLSCR1O15162 318 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 CDKL5O76039 1030 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 MBD4O95243 580 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 FGRP09769 529 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 HOXA10P31260 410 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-208ENST00000468792 HIBADHP31937 336 aaKnown RBP8.94□□□□□ -0.98
COL6A3-208ENST00000468792 KCNQ4P56696 695 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 RESTQ13127 1097 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 NFIXQ14938 502 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 PPP2R5BQ15173 497 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 AKNAD1Q5T1N1 836 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 CCDC183Q5T5S1 534 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 SPTY2D1Q68D10 685 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-208ENST00000468792 CDC37L1Q7L3B6 337 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 CERS3Q8IU89 383 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 IGDCC4Q8TDY8 1250 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 NAPBQ9H115 298 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 HPS5Q9UPZ3 1129 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 CNPY2Q9Y2B0 182 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 COL4A1P02462 1669 aa8.94□□□□□ -0.98
COL6A3-208ENST00000468792 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 A0A0G2JLW4 131 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 PTPDC1A2A3K4 754 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 H3BQV1 296 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 SNAP23O00161 211 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 JAK2O60674 1132 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 BBOX1O75936 387 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 APPP05067 770 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 GYS1P13807 737 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 DNM1Q05193 864 aaKnown RBP8.93□□□□□ -0.98
COL6A3-208ENST00000468792 STK3Q13188 491 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 IFFO2Q5TF58 517 aa8.93□□□□□ -0.98
COL6A3-208ENST00000468792 FOXD4L5Q5VV16 416 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms