RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NRXN3Q9Y4C0 1643 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 A0A1W2PQ27 194 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 A0A1W2PQ64 194 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 A0A1W2PQD8 194 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 EXOSC10Q01780 885 aaKnown RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 MYL5Q02045 173 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 ZNF530Q6P9A1 599 aaPredicted RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 RIC3Q7Z5B4 369 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 EXOC4Q96A65 974 aa13.48□□□□□ -0.25
CPSF3-202ENST00000460593 CWC15Q9P013 229 aaKnown RBP13.48□□□□□ -0.25
CPSF3-202ENST00000460593 SYKP43405 635 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 LEKR1Q6ZMV7 388 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 SYNE3Q6ZMZ3 975 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 ANKZF1Q9H8Y5 726 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 ABCB6Q9NP58 842 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 ABL1P00519 1130 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 BMP6P22004 513 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 TXLNAP40222 546 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 ABTB2Q8N961 1025 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 CCDC102AQ96A19 550 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 MPHOSPH8Q99549 860 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 MYD88Q99836 296 aa13.47□□□□□ -0.25
CPSF3-202ENST00000460593 LOC102724159A0A0B4J2E5 919 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 UBE2Q2LH0YL09 131 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 ARHGAP6O43182 974 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 CCP110O43303 1012 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 TPM1P09493 284 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 CHMP4BP1P59074 171 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 PWP2Q15269 919 aaKnown RBP13.46□□□□□ -0.25
CPSF3-202ENST00000460593 ANO1Q5XXA6 986 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 LINS1Q8NG48 757 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 RABGGTAQ92696 567 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 LRRC37A3O60309 1634 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 ATP5JP18859 108 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 SLC39A6Q13433 755 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 E2F4Q16254 413 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 SHC4Q6S5L8 630 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 GRAMD1CQ8IYS0 662 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 TC2NQ8N9U0 490 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 KCNG4Q8TDN1 519 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 RABEP2Q9H5N1 569 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 DENND2AQ9ULE3 1009 aa13.46□□□□□ -0.25
CPSF3-202ENST00000460593 CACNA1FO60840 1977 aa13.46□□□□□ -0.26
CPSF3-202ENST00000460593 ATP8B1O43520 1251 aa13.46□□□□□ -0.26
CPSF3-202ENST00000460593 LONRF3Q496Y0 759 aa13.46□□□□□ -0.26
CPSF3-202ENST00000460593 GDAP1L1Q96MZ0 367 aa13.46□□□□□ -0.26
CPSF3-202ENST00000460593 AKAP2Q9Y2D5 859 aa13.46□□□□□ -0.26
CPSF3-202ENST00000460593 TIMM10P62072 90 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 FMR1Q06787 632 aaKnown RBP eCLIP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 BEND6Q5SZJ8 279 aaPredicted RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 RGS22Q8NE09 1264 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 EFCC1Q9HA90 598 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 PCDHA5Q9Y5H7 936 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 KLF18A0A0U1RQI7 1052 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 GOLGA8BA8MQT2 603 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 EIF3CLB5ME19 914 aaKnown RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 ATP5J2-PTCD1G3V325 749 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 MAP2K7O14733 419 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 PTCD1O75127 700 aaKnown RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 COBLO75128 1261 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 HSPD1P10809 573 aaKnown RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 METTL16Q86W50 562 aaKnown RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 EIF3CQ99613 913 aaKnown RBP13.45□□□□□ -0.26
CPSF3-202ENST00000460593 ABCC6O95255 1503 aa13.45□□□□□ -0.26
CPSF3-202ENST00000460593 IKBKBO14920 756 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 FMN2Q9NZ56 1722 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.44□□□□□ -0.26
CPSF3-202ENST00000460593 VSNL1P62760 191 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 NKX2-3Q8TAU0 364 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 HINFPQ9BQA5 517 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 SAMSN1Q9NSI8 373 aaKnown RBP13.44□□□□□ -0.26
CPSF3-202ENST00000460593 N4BP2Q86UW6 1770 aaPredicted RBP13.44□□□□□ -0.26
CPSF3-202ENST00000460593 CEMIPQ8WUJ3 1361 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 PLEKHG2Q9H7P9 1386 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 CBFA2T2O43439 604 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 CUTAO60888 179 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 TUBB4AP04350 444 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 PTPN12Q05209 780 aaKnown RBP13.44□□□□□ -0.26
CPSF3-202ENST00000460593 JAKMIP3Q5VZ66 844 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 ICE2Q659A1 982 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 UBE3BQ7Z3V4 1068 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 POLR3EQ9NVU0 708 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 NWD1Q149M9 1564 aa13.44□□□□□ -0.26
CPSF3-202ENST00000460593 CCDC151A5D8V7 595 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 CMA1P23946 247 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 KIF23Q02241 960 aaPredicted RBP13.43□□□□□ -0.26
CPSF3-202ENST00000460593 ZNF569Q5MCW4 686 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 GPATCH11Q8N954 259 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 CDC5LQ99459 802 aaKnown RBP13.43□□□□□ -0.26
CPSF3-202ENST00000460593 M0R2C6 588 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 CPLX1O14810 134 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 YEATS4O95619 227 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 TTC31Q49AM3 519 aaPredicted RBP13.43□□□□□ -0.26
CPSF3-202ENST00000460593 ATL3Q6DD88 541 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 OLFM4Q6UX06 510 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 RAD9BQ6WBX8 426 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 RIN2Q8WYP3 895 aaPredicted RBP13.43□□□□□ -0.26
CPSF3-202ENST00000460593 BABAM1Q9NWV8 329 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 NFE2L3Q9Y4A8 694 aa13.43□□□□□ -0.26
CPSF3-202ENST00000460593 TEX33O43247 280 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms