RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 NARFQ9UHQ1 456 aa13.85□□□□□ -0.19
VTA1-203ENST00000452973 MINPP1Q9UNW1 487 aa13.85□□□□□ -0.19
VTA1-203ENST00000452973 COL4A1P02462 1669 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 CPLX1O14810 134 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 SMARCC2Q8TAQ2 1214 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 ZNF274Q96GC6 653 aaPredicted RBP13.84□□□□□ -0.19
VTA1-203ENST00000452973 NLRP3Q96P20 1036 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 TDO2P48775 406 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 CYB5R4Q7L1T6 521 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 IFNL3Q8IZI9 196 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 LCORLQ8N3X6 602 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 LLPHQ9BRT6 129 aaKnown RBP13.84□□□□□ -0.19
VTA1-203ENST00000452973 FTOQ9C0B1 505 aaKnown RBP eCLIP13.84□□□□□ -0.19
VTA1-203ENST00000452973 JAG2Q9Y219 1238 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 SLC4A4Q9Y6R1 1079 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 CNTNAP4Q9C0A0 1308 aa13.84□□□□□ -0.19
VTA1-203ENST00000452973 CYP7A1P22680 504 aa13.83□□□□□ -0.19
VTA1-203ENST00000452973 RFC4P35249 363 aa13.83□□□□□ -0.19
VTA1-203ENST00000452973 GJB4Q9NTQ9 266 aa13.83□□□□□ -0.19
VTA1-203ENST00000452973 PDIA4P13667 645 aaKnown RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 KLRK1P26718 216 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 HMGN5P82970 282 aaKnown RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 FAM43AQ8N2R8 423 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 EPB41L4AQ9HCS5 686 aaPredicted RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 TFCP2L1Q9NZI6 479 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 AFF2P51816 1311 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 LIG1P18858 919 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 HSPA1LP34931 641 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 CCDC173Q0VFZ6 552 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 RESTQ13127 1097 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 SF3B3Q15393 1217 aaKnown RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 CAVIN4Q5BKX8 364 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 TPTE2Q6XPS3 522 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 NFXL1Q6ZNB6 911 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 LEO1Q8WVC0 666 aaPredicted RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 SENP2Q9HC62 589 aa13.83□□□□□ -0.2
VTA1-203ENST00000452973 BSDC1Q9NW68 430 aaPredicted RBP13.83□□□□□ -0.2
VTA1-203ENST00000452973 DDX60Q8IY21 1712 aaKnown RBP13.82□□□□□ -0.2
VTA1-203ENST00000452973 NEDD4P46934 1319 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 PATL2C9JE40 543 aaKnown RBP13.82□□□□□ -0.2
VTA1-203ENST00000452973 RPS8P62241 208 aaKnown RBP13.82□□□□□ -0.2
VTA1-203ENST00000452973 FAM196AQ6ZSG2 479 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 BICD2Q8TD16 824 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 ZKSCAN3Q9BRR0 538 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 MYL10Q9BUA6 226 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 SCAND2PQ9GZW5 306 aaPredicted RBP13.82□□□□□ -0.2
VTA1-203ENST00000452973 KIF3AQ9Y496 699 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 SLC51AQ86UW1 340 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 MICU3Q86XE3 530 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 SEPT12Q8IYM1 358 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 SDR42E1Q8WUS8 393 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 GNL3LQ9NVN8 582 aaKnown RBP13.82□□□□□ -0.2
VTA1-203ENST00000452973 MYH7P12883 1935 aa13.82□□□□□ -0.2
VTA1-203ENST00000452973 ADGRA1Q86SQ6 560 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 NYXQ9GZU5 481 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 SPATA31A6Q5VVP1 1343 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 GSG1L2A8MUP6 293 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 MINDY4BA8MYZ0 360 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 FDPSP14324 419 aaKnown RBP13.81□□□□□ -0.2
VTA1-203ENST00000452973 ADD1P35611 737 aaKnown RBP13.81□□□□□ -0.2
VTA1-203ENST00000452973 PLCB2Q00722 1185 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 CHAF1AQ13111 956 aaPredicted RBP13.81□□□□□ -0.2
VTA1-203ENST00000452973 HPS5Q9UPZ3 1129 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 RTL9Q8NET4 1388 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 TRAPPC3LQ5T215 181 aa13.81□□□□□ -0.2
VTA1-203ENST00000452973 ORC3Q9UBD5 711 aaPredicted RBP13.81□□□□□ -0.2
VTA1-203ENST00000452973 ANGEL1Q9UNK9 670 aaKnown RBP13.81□□□□□ -0.2
VTA1-203ENST00000452973 CARMIL3Q8ND23 1372 aa13.8□□□□□ -0.2
VTA1-203ENST00000452973 POLR3DP05423 398 aaPredicted RBP13.8□□□□□ -0.2
VTA1-203ENST00000452973 RC3H1Q5TC82 1133 aaKnown RBP13.8□□□□□ -0.2
VTA1-203ENST00000452973 FAM84BQ96KN1 310 aaPredicted RBP13.8□□□□□ -0.2
VTA1-203ENST00000452973 ZSCAN16Q9H4T2 348 aaPredicted RBP13.8□□□□□ -0.2
VTA1-203ENST00000452973 DACT1Q9NYF0 836 aa13.8□□□□□ -0.2
VTA1-203ENST00000452973 TMEM67Q5HYA8 995 aa13.8□□□□□ -0.2
VTA1-203ENST00000452973 CKAP2LQ8IYA6 745 aa13.8□□□□□ -0.2
VTA1-203ENST00000452973 NACAP1Q9BZK3 213 aa13.8□□□□□ -0.2
VTA1-203ENST00000452973 LRP5O75197 1615 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 SMIM22K7EJ46 135 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 DHX16O60231 1041 aaKnown RBP13.79□□□□□ -0.2
VTA1-203ENST00000452973 UBE4AQ14139 1066 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 MPNDQ8N594 471 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 C8orf76Q96K31 380 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 ZSWIM5Q9P217 1185 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 IFIT3O14879 490 aaKnown RBP13.79□□□□□ -0.2
VTA1-203ENST00000452973 COL5A3P25940 1745 aaPredicted RBP13.79□□□□□ -0.2
VTA1-203ENST00000452973 METAP2P50579 478 aaKnown RBP eCLIP13.79□□□□□ -0.2
VTA1-203ENST00000452973 MFSD6Q6ZSS7 791 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 PHKBQ93100 1093 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 PGBD1Q96JS3 809 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 AIFM3Q96NN9 605 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 ATRNO75882 1429 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 DYNLL1P63167 89 aaKnown RBP13.79□□□□□ -0.2
VTA1-203ENST00000452973 NAA16Q6N069 864 aaPredicted RBP13.79□□□□□ -0.2
VTA1-203ENST00000452973 LRRC4BQ9NT99 713 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 CFAP45Q9UL16 551 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 TACC3Q9Y6A5 838 aa13.79□□□□□ -0.2
VTA1-203ENST00000452973 SALL1Q9NSC2 1324 aa13.78□□□□□ -0.2
VTA1-203ENST00000452973 ESPNB1AK53 854 aa13.78□□□□□ -0.2
VTA1-203ENST00000452973 CCDC82Q8N4S0 544 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms