RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 FOXD4L4Q8WXT5 416 aaPredicted RBP25.06■■□□□ 1.6
PTPRF-207ENST00000436724 CRAMP1Q96RY5 1269 aa25.06■■□□□ 1.6
PTPRF-207ENST00000436724 ZNF213O14771 459 aa25.05■■□□□ 1.6
PTPRF-207ENST00000436724 NBPF3Q9H094 633 aa25.05■■□□□ 1.6
PTPRF-207ENST00000436724 EPB41L4AQ9HCS5 686 aaPredicted RBP25.05■■□□□ 1.6
PTPRF-207ENST00000436724 UFL1O94874 794 aa25.05■■□□□ 1.6
PTPRF-207ENST00000436724 HMGB1P09429 215 aaKnown RBP25.05■■□□□ 1.6
PTPRF-207ENST00000436724 CACNA1SQ13698 1873 aa25.05■■□□□ 1.6
PTPRF-207ENST00000436724 SRGNP10124 158 aa25.04■■□□□ 1.6
PTPRF-207ENST00000436724 EXOSC10Q01780 885 aaKnown RBP25.04■■□□□ 1.6
PTPRF-207ENST00000436724 STK3Q13188 491 aa25.04■■□□□ 1.6
PTPRF-207ENST00000436724 BRF1Q92994 677 aa25.04■■□□□ 1.6
PTPRF-207ENST00000436724 DEFB132Q7Z7B7 95 aa25.04■■□□□ 1.6
PTPRF-207ENST00000436724 PATL2C9JE40 543 aaKnown RBP25.03■■□□□ 1.6
PTPRF-207ENST00000436724 PRDX5P30044 214 aa25.03■■□□□ 1.6
PTPRF-207ENST00000436724 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.03■■□□□ 1.6
PTPRF-207ENST00000436724 GSG1L2A8MUP6 293 aa25.03■■□□□ 1.6
PTPRF-207ENST00000436724 FGD1P98174 961 aa25.03■■□□□ 1.6
PTPRF-207ENST00000436724 IFNL3Q8IZI9 196 aa25.03■■□□□ 1.6
PTPRF-207ENST00000436724 OLFM4Q6UX06 510 aa25.02■■□□□ 1.6
PTPRF-207ENST00000436724 TBC1D10CQ8IV04 446 aa25.02■■□□□ 1.6
PTPRF-207ENST00000436724 GBP4Q96PP9 640 aa25.02■■□□□ 1.6
PTPRF-207ENST00000436724 SMC3Q9UQE7 1217 aa25.02■■□□□ 1.6
PTPRF-207ENST00000436724 SLC4A4Q9Y6R1 1079 aa25.02■■□□□ 1.6
PTPRF-207ENST00000436724 PPEF1O14829 653 aaPredicted RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 NAA16Q6N069 864 aaPredicted RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 CHAMP1Q96JM3 812 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 STK32BQ9NY57 414 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 POLLQ9UGP5 575 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 GGA1Q9UJY5 639 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 MECOMQ03112 1051 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 NKX2-3Q8TAU0 364 aa25.01■■□□□ 1.59
PTPRF-207ENST00000436724 NSUN4Q96CB9 384 aaKnown RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 PDGFDQ9GZP0 370 aaPredicted RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 RTN4Q9NQC3 1192 aaKnown RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 PDS5AQ29RF7 1337 aaKnown RBP25.01■■□□□ 1.59
PTPRF-207ENST00000436724 BAG4O95429 457 aaKnown RBP25■■□□□ 1.59
PTPRF-207ENST00000436724 NAPBQ9H115 298 aa25■■□□□ 1.59
PTPRF-207ENST00000436724 ATP2B4P23634 1241 aa25■■□□□ 1.59
PTPRF-207ENST00000436724 DYNLL1P63167 89 aaKnown RBP25■■□□□ 1.59
PTPRF-207ENST00000436724 TDRD7Q8NHU6 1098 aaKnown RBP25■■□□□ 1.59
PTPRF-207ENST00000436724 TBC1D16Q8TBP0 767 aa25■■□□□ 1.59
PTPRF-207ENST00000436724 GPHNQ9NQX3 736 aaPredicted RBP25■■□□□ 1.59
PTPRF-207ENST00000436724 COL11A2P13942 1736 aaPredicted RBP24.99■■□□□ 1.59
PTPRF-207ENST00000436724 MAGEB6P1A0A0J9YX57 407 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 BRD1O95696 1058 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 GJB2P29033 226 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 ALX1Q15699 326 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 ZNF804AQ7Z570 1209 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 SDR42E1Q8WUS8 393 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 RIOK1Q9BRS2 568 aaKnown RBP24.99■■□□□ 1.59
PTPRF-207ENST00000436724 INCENPQ9NQS7 918 aa24.99■■□□□ 1.59
PTPRF-207ENST00000436724 NPR1P16066 1061 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 PDE6BP35913 854 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 APOBRQ0VD83 1088 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 MB21D2Q8IYB1 491 aaPredicted RBP24.98■■□□□ 1.59
PTPRF-207ENST00000436724 PODXL2Q9NZ53 605 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 CLEC17AQ6ZS10 378 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 C15orf52Q6ZUT6 534 aaKnown RBP24.98■■□□□ 1.59
PTPRF-207ENST00000436724 NCOA7Q8NI08 942 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 AGXT2Q9BYV1 514 aa24.98■■□□□ 1.59
PTPRF-207ENST00000436724 C6orf229H3BNL8 230 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 GNAT2P19087 354 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 SP8Q8IXZ3 490 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 TDO2P48775 406 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 CTDSPL2Q05D32 466 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 RALYLQ86SE5 291 aaKnown RBP24.97■■□□□ 1.59
PTPRF-207ENST00000436724 ATP6V0A2Q9Y487 856 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 LRRC37AA6NMS7 1700 aa24.97■■□□□ 1.59
PTPRF-207ENST00000436724 TRAK2O60296 914 aa24.96■■□□□ 1.59
PTPRF-207ENST00000436724 ANTXR2P58335 489 aa24.96■■□□□ 1.59
PTPRF-207ENST00000436724 SF3B2Q13435 895 aaKnown RBP24.96■■□□□ 1.59
PTPRF-207ENST00000436724 CD209Q9NNX6 404 aa24.96■■□□□ 1.59
PTPRF-207ENST00000436724 ZMYM6O95789 1325 aa24.96■■□□□ 1.59
PTPRF-207ENST00000436724 DDX11L8A8MPP1 907 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 PRC1O43663 620 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 SYT1P21579 422 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 GRIK5Q16478 980 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 GTF3C6Q969F1 213 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 TACC3Q9Y6A5 838 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 LTBP1Q14766 1721 aa24.95■■□□□ 1.59
PTPRF-207ENST00000436724 MCM5P33992 734 aa24.95■■□□□ 1.58
PTPRF-207ENST00000436724 BAG6P46379 1132 aa24.95■■□□□ 1.58
PTPRF-207ENST00000436724 NEDD4P46934 1319 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 STK11IPQ8N1F8 1099 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 ZNF622Q969S3 477 aaKnown RBP eCLIP24.94■■□□□ 1.58
PTPRF-207ENST00000436724 MASTLQ96GX5 879 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 NACAP1Q9BZK3 213 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 AATFQ9NY61 560 aaKnown RBP eCLIP24.94■■□□□ 1.58
PTPRF-207ENST00000436724 SCRN1Q12765 414 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 TRDNQ13061 729 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 MCTP1Q6DN14 999 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 TMC4Q7Z404 712 aa24.94■■□□□ 1.58
PTPRF-207ENST00000436724 NAP1L2Q9ULW6 460 aaPredicted RBP24.94■■□□□ 1.58
PTPRF-207ENST00000436724 B4E1Z4 1266 aa24.93■■□□□ 1.58
PTPRF-207ENST00000436724 ALDH1B1P30837 517 aa24.93■■□□□ 1.58
PTPRF-207ENST00000436724 WDR66Q8TBY9 1149 aa24.93■■□□□ 1.58
PTPRF-207ENST00000436724 SMIM22K7EJ46 135 aa24.93■■□□□ 1.58
PTPRF-207ENST00000436724 RIMBP2O15034 1052 aa24.93■■□□□ 1.58
PTPRF-207ENST00000436724 FOXD4L6Q3SYB3 417 aaPredicted RBP24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms