RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CMA1P23946 247 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 NDUFA8P51970 172 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 HAND2P61296 217 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 DMTNQ08495 405 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 TIGD1Q96MW7 591 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 CLIC4Q9Y696 253 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 FAM177BA6PVY3 158 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 ANTXR2P58335 489 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 NLRP12P59046 1061 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 PTPN14Q15678 1187 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 ATP2B3Q16720 1220 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 ANO1Q5XXA6 986 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 CPLX2Q6PUV4 134 aaKnown RBP13.12□□□□□ -0.31
USP4-205ENST00000431357 FEZ1Q99689 392 aa13.12□□□□□ -0.31
USP4-205ENST00000431357 PUS7LQ9H0K6 701 aaKnown RBP13.12□□□□□ -0.31
USP4-205ENST00000431357 GPHNQ9NQX3 736 aaPredicted RBP13.12□□□□□ -0.31
USP4-205ENST00000431357 POLR3DP05423 398 aaPredicted RBP13.11□□□□□ -0.31
USP4-205ENST00000431357 SLC3A2P08195 630 aaKnown RBP13.11□□□□□ -0.31
USP4-205ENST00000431357 CCZ1BP86790 482 aa13.11□□□□□ -0.31
USP4-205ENST00000431357 CCZ1P86791 482 aaPredicted RBP13.11□□□□□ -0.31
USP4-205ENST00000431357 KIF23Q02241 960 aaPredicted RBP13.11□□□□□ -0.31
USP4-205ENST00000431357 NYAP1Q6ZVC0 841 aa13.11□□□□□ -0.31
USP4-205ENST00000431357 CCDC150Q8NCX0 1101 aa13.11□□□□□ -0.31
USP4-205ENST00000431357 COL5A2P05997 1499 aaPredicted RBP13.11□□□□□ -0.31
USP4-205ENST00000431357 ZMYM6O95789 1325 aa13.11□□□□□ -0.31
USP4-205ENST00000431357 DDX60Q8IY21 1712 aaKnown RBP13.1□□□□□ -0.31
USP4-205ENST00000431357 ATRNO75882 1429 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 ADD2P35612 726 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 NCBP1Q09161 790 aaKnown RBP13.1□□□□□ -0.31
USP4-205ENST00000431357 SCARF1Q14162 830 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 HSP90AB3PQ58FF7 597 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 OTUD7BQ6GQQ9 843 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 FILIP1Q7Z7B0 1213 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 JMYQ8N9B5 988 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 ARID3AQ99856 593 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 CGNQ9P2M7 1197 aaKnown RBP13.1□□□□□ -0.31
USP4-205ENST00000431357 RIPOR2Q9Y4F9 1068 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 NRDCO43847 1150 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 PPFIA3O75145 1194 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 ZNF202O95125 648 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 TUBB4AP04350 444 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 KCNJ6P48051 423 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 SLC39A14Q15043 492 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 UBE3CQ15386 1083 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 METTL24Q5JXM2 366 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 TMOD3Q9NYL9 352 aa13.1□□□□□ -0.31
USP4-205ENST00000431357 ANGEL1Q9UNK9 670 aaKnown RBP13.1□□□□□ -0.31
USP4-205ENST00000431357 PPP6R2O75170 966 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 AXDND1Q5T1B0 1012 aaPredicted RBP13.09□□□□□ -0.31
USP4-205ENST00000431357 CCAR2Q8N163 923 aaKnown RBP13.09□□□□□ -0.31
USP4-205ENST00000431357 TMEM87BQ96K49 555 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 STRCP1A6NGW2 1772 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 RIC1Q4ADV7 1423 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 IKBKBO14920 756 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 STARD3NLO95772 234 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 ARID5BQ14865 1188 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 GIGYF2Q6Y7W6 1299 aaKnown RBP13.09□□□□□ -0.31
USP4-205ENST00000431357 LDHAL6AQ6ZMR3 332 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 FAM89AQ96GI7 184 aa13.09□□□□□ -0.31
USP4-205ENST00000431357 GTPBP4Q9BZE4 634 aaKnown RBP13.09□□□□□ -0.31
USP4-205ENST00000431357 MAP3K15Q6ZN16 1313 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 MYH7P12883 1935 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 ANKRD18BA2A2Z9 1011 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 KIF28PB7ZC32 967 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 SH2B2O14492 632 aaPredicted RBP13.08□□□□□ -0.32
USP4-205ENST00000431357 UQCRFS1P1P0C7P4 283 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 PFKFB1P16118 471 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 MCAMP43121 646 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 METAP2P50579 478 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP4-205ENST00000431357 DPCR1Q3MIW9 517 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 NBPF11Q86T75 865 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 ALG1Q9BT22 464 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 C4AP0C0L4 1744 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 C4BP0C0L5 1744 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 NEDD4P46934 1319 aa13.08□□□□□ -0.32
USP4-205ENST00000431357 FAM237AA0A1B0GTK4 181 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 MYO1BO43795 1136 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 BRD2P25440 801 aaKnown RBP13.07□□□□□ -0.32
USP4-205ENST00000431357 ALX1Q15699 326 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 SLC9C2Q5TAH2 1124 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 KIF18AQ8NI77 898 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 TBC1D2BQ9UPU7 963 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 A0A087WWV3 80 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.07□□□□□ -0.32
USP4-205ENST00000431357 PSDA5PKW4 1024 aaPredicted RBP13.07□□□□□ -0.32
USP4-205ENST00000431357 SMC2O95347 1197 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 ITGA6P23229 1130 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 CBX1P83916 185 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 BRINP3Q76B58 766 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 TTLL11Q8NHH1 800 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 ZNF592Q92610 1267 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 ERCC4Q92889 916 aaPredicted RBP13.07□□□□□ -0.32
USP4-205ENST00000431357 CNNM1Q9NRU3 951 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 TUBE1Q9UJT0 475 aa13.07□□□□□ -0.32
USP4-205ENST00000431357 SHANK3Q9BYB0 1731 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 USP27XA6NNY8 438 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 SYKP43405 635 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 TRIM29Q14134 588 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 KRT40Q6A162 431 aa13.06□□□□□ -0.32
USP4-205ENST00000431357 NLRP10Q86W26 655 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms