RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 DLL1O00548 723 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 SCAMP3O14828 347 aaKnown RBP6.89□□□□□ -1.31
USP40-204ENST00000427947 TM4SF5O14894 197 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 ADAM11O75078 769 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 PAGE1O75459 146 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 SPATA31C1P0DKV0 1188 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 GRIK4Q16099 956 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 SULF2Q8IWU5 870 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 DCAF11Q8TEB1 546 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 TRIM56Q9BRZ2 755 aaKnown RBP6.89□□□□□ -1.31
USP40-204ENST00000427947 USP26Q9BXU7 913 aa6.89□□□□□ -1.31
USP40-204ENST00000427947 CYP11A1P05108 521 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 ZNF76P36508 570 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 FANCCQ00597 558 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 AP3B2Q13367 1082 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 MAP3K11Q16584 847 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 NOC4LQ9BVI4 516 aaKnown RBP6.88□□□□□ -1.31
USP40-204ENST00000427947 KCNK4Q9NYG8 393 aa6.88□□□□□ -1.31
USP40-204ENST00000427947 F6X3S4 739 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 EIF4EBP3O60516 100 aaPredicted RBP6.87□□□□□ -1.31
USP40-204ENST00000427947 NME2P22392 152 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 PCNX4Q63HM2 1172 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 SHISA2Q6UWI4 295 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 HS2ST1Q7LGA3 356 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 STK35Q8TDR2 534 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 UBASH3BQ8TF42 649 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 CORO1BQ9BR76 489 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 NRSN2Q9GZP1 204 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 CBX8Q9HC52 389 aa6.87□□□□□ -1.31
USP40-204ENST00000427947 METTL5Q9NRN9 209 aaKnown RBP6.87□□□□□ -1.31
USP40-204ENST00000427947 WISP1O95388 367 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 ECEL1O95672 775 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 TCF3P15923 654 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 MAOBP27338 520 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 POU4F3Q15319 338 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 DUOXA2Q1HG44 320 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 TTBK2Q6IQ55 1244 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 IGF2-ASQ6U949 168 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 ZC3H12CQ9C0D7 883 aaKnown RBP6.86□□□□□ -1.31
USP40-204ENST00000427947 GGT7Q9UJ14 662 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 SAMM50Q9Y512 469 aa6.86□□□□□ -1.31
USP40-204ENST00000427947 LOC100289279A0A1B0GTE1 492 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 GSTP1P09211 210 aaKnown RBP6.85□□□□□ -1.31
USP40-204ENST00000427947 SELPP16109 830 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 ARNTP27540 789 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 LIG3P49916 1009 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 ACAD11Q709F0 780 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 ALYREFQ86V81 257 aaKnown RBP6.85□□□□□ -1.31
USP40-204ENST00000427947 RNF34Q969K3 372 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 MRPL18Q9H0U6 180 aaKnown RBP6.85□□□□□ -1.31
USP40-204ENST00000427947 USP21Q9UK80 565 aa6.85□□□□□ -1.31
USP40-204ENST00000427947 APBA3O96018 575 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 CTSBP07858 339 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 RLBP1P12271 317 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 LMNB1P20700 586 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 BMP6P22004 513 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 HDLBPQ00341 1268 aaKnown RBP6.84□□□□□ -1.31
USP40-204ENST00000427947 PDE3AQ14432 1141 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 RASIP1Q5U651 963 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 C9orf131Q5VYM1 1079 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 MAP1SQ66K74 1059 aaPredicted RBP6.84□□□□□ -1.31
USP40-204ENST00000427947 GRIN3AQ8TCU5 1115 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 KCNB2Q92953 911 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 NACC1Q96RE7 527 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 EMILIN2Q9BXX0 1053 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 KBTBD4Q9NVX7 518 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 TLR6Q9Y2C9 796 aa6.84□□□□□ -1.31
USP40-204ENST00000427947 GBP2P32456 591 aaPredicted RBP6.83□□□□□ -1.32
USP40-204ENST00000427947 LRRC14Q15048 493 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 LLGL2Q6P1M3 1020 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 ERMP1Q7Z2K6 904 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 PDZD3Q86UT5 571 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 RELL1Q8IUW5 271 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 AGGF1Q8N302 714 aaeCLIP6.83□□□□□ -1.32
USP40-204ENST00000427947 RUSC1Q9BVN2 902 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 COPRSQ9NQ92 184 aa6.83□□□□□ -1.32
USP40-204ENST00000427947 C9orf172C9J069 976 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 DLGAP3O95886 979 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 ZNF252P-AS1Q0IIN9 211 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 PWP1Q13610 501 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 ZNF394Q53GI3 561 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 KIAA1211Q6ZU35 1233 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.82□□□□□ -1.32
USP40-204ENST00000427947 USP48Q86UV5 1035 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 METTL16Q86W50 562 aaKnown RBP6.82□□□□□ -1.32
USP40-204ENST00000427947 PHC3Q8NDX5 983 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 LENG1Q96BZ8 264 aaPredicted RBP6.82□□□□□ -1.32
USP40-204ENST00000427947 DCAF5Q96JK2 942 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 RSRP1Q9BUV0 290 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 CCDC86Q9H6F5 360 aaKnown RBP6.82□□□□□ -1.32
USP40-204ENST00000427947 CYP8B1Q9UNU6 501 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 PCDHGB7Q9Y5F8 929 aa6.82□□□□□ -1.32
USP40-204ENST00000427947 KRBA1A5PL33 1030 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 MINDY4BA8MYZ0 360 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 ALX3O95076 343 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 RPS26P62854 115 aaKnown RBP6.81□□□□□ -1.32
USP40-204ENST00000427947 NRG1Q02297 640 aaPredicted RBP6.81□□□□□ -1.32
USP40-204ENST00000427947 HP1BP3Q5SSJ5 553 aaPredicted RBP6.81□□□□□ -1.32
USP40-204ENST00000427947 MPRIPQ6WCQ1 1025 aa6.81□□□□□ -1.32
USP40-204ENST00000427947 AGMOQ6ZNB7 445 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms