RNA–Protein interactions for RNA: ENST00000427516.2

VTI1BP4-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 4, humanhuman

BASIC

Gene VTI1BP4, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP4-201ENST00000427516 PPP4CP60510 307 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 APBA1Q02410 837 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 PPFIA1Q13136 1202 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 SEMA3FQ13275 785 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 NAA30Q147X3 362 aaPredicted RBP6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 WHAMMP3Q1A5X7 153 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CEP85LQ5SZL2 805 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 VPS53Q5VIR6 699 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 RSRC2Q7L4I2 434 aaKnown RBP6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 SRGAP1Q7Z6B7 1085 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CCDC83Q8IWF9 413 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 RPUSD2Q8IZ73 545 aaKnown RBP6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 MSANTD4Q8NCY6 345 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CNNM3Q8NE01 707 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 FAM76AQ8TAV0 307 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 HOOK2Q96ED9 719 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CCDC34Q96HJ3 373 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 JAKMIP1Q96N16 626 aaKnown RBP6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 OSBPL9Q96SU4 736 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CRACR2AQ9BSW2 395 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 NAA15Q9BXJ9 866 aaKnown RBP6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 LRRCC1Q9C099 1032 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 ATP6V0A4Q9HBG4 840 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 MRFAP1Q9Y605 127 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 CDC42BPGQ6DT37 1551 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 EVC2Q86UK5 1308 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 TTC21AQ8NDW8 1320 aa6.42□□□□□ -1.38
VTI1BP4-201ENST00000427516 ERVK-7P63135 1459 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CDK12Q9NYV4 1490 aaPredicted RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CHD2O14647 1828 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 ADAMTS12P58397 1594 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SEMA3EO15041 775 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 NPHP1O15259 732 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 KIF5CO60282 957 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SNUPNO95149 360 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 ZKSCAN1P17029 563 aaPredicted RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 GBP2P32456 591 aaPredicted RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 HSPA4P34932 840 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 TMPOP42166 694 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 AMPHP49418 695 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SMTNP53814 917 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CLNS1AP54105 237 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 KCNC4Q03721 635 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SCRN1Q12765 414 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 PTGDRQ13258 359 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 MTA1Q13330 715 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 TMED1Q13445 227 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SNCBQ16143 134 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 WLSQ5T9L3 541 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 NFATC2IPQ8NCF5 419 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CCDC148Q8NFR7 591 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CCDC47Q96A33 483 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 SAAL1Q96ER3 474 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CALR3Q96L12 384 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 EYA1Q99502 592 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 PAGR1Q9BTK6 254 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CARD6Q9BX69 1037 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 PARD6BQ9BYG5 372 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 GDPD2Q9HCC8 539 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CHCHD3Q9NX63 227 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 TRMT1Q9NXH9 659 aaKnown RBP6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 DACT1Q9NYF0 836 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 CYP46A1Q9Y6A2 500 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 FAM169AQ9Y6X4 670 aa6.41□□□□□ -1.38
VTI1BP4-201ENST00000427516 VPS37CA5D8V6 355 aaPredicted RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 HIP1O00291 1037 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 IKBKBO14920 756 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 STX10O60499 249 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 CKAP4Q07065 602 aaKnown RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 RGL3Q3MIN7 710 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 TSGA10IPQ3SY00 556 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 WDR93Q6P2C0 686 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 LRRC31Q6UY01 552 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 KLHL23Q8NBE8 558 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 CCDC26Q8TAB7 109 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 LEO1Q8WVC0 666 aaPredicted RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 MKL1Q969V6 931 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 ZNF396Q96N95 335 aaPredicted RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 RUFY1Q96T51 708 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 JPH2Q9BR39 696 aaPredicted RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 DNAJC25Q9H1X3 360 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 FAM204AQ9H8W3 233 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 PDE11AQ9HCR9 933 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 INCENPQ9NQS7 918 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 HOOK1Q9UJC3 728 aaKnown RBP6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 PARP3Q9Y6F1 533 aa6.4□□□□□ -1.38
VTI1BP4-201ENST00000427516 CARMIL2Q6F5E8 1435 aa6.4□□□□□ -1.39
VTI1BP4-201ENST00000427516 HECW2Q9P2P5 1572 aa6.4□□□□□ -1.39
VTI1BP4-201ENST00000427516 ZC3H13Q5T200 1668 aaKnown RBP6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 TARSL2A2RTX5 802 aaKnown RBP6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 CTAGE15A4D2H0 777 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 AP5Z1O43299 807 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 SMARCA5O60264 1052 aaPredicted RBP6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 FCHSD2O94868 740 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 CCDC175P0C221 793 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 CTAGE8P0CG41 777 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 PECAM1P16284 738 aaPredicted RBP6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 GJB2P29033 226 aa6.39□□□□□ -1.39
VTI1BP4-201ENST00000427516 MAGEA8P43361 318 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms