RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 NLRP3Q96P20 1036 aa12.54□□□□□ -0.4
CUX1-205ENST00000425244 MAST3O60307 1309 aa12.54□□□□□ -0.4
CUX1-205ENST00000425244 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.53□□□□□ -0.4
CUX1-205ENST00000425244 CIAO1O76071 339 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 ADRA2BP18089 450 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 TYRO3Q06418 890 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 SF3B2Q13435 895 aaKnown RBP12.53□□□□□ -0.4
CUX1-205ENST00000425244 TTC39AQ5SRH9 613 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 COL23A1Q86Y22 540 aaPredicted RBP12.53□□□□□ -0.4
CUX1-205ENST00000425244 CNBD1Q8NA66 436 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 GPR108Q9NPR9 543 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 RIPOR2Q9Y4F9 1068 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 UBR3Q6ZT12 1888 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 SCN7AQ01118 1682 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 M0R2C6 588 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 AP5Z1O43299 807 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 HMGB1P09429 215 aaKnown RBP12.53□□□□□ -0.4
CUX1-205ENST00000425244 IGHMBP2P38935 993 aaKnown RBP12.53□□□□□ -0.4
CUX1-205ENST00000425244 HAND2P61296 217 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 RESTQ13127 1097 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 DSCC1Q9BVC3 393 aa12.53□□□□□ -0.4
CUX1-205ENST00000425244 PTPDC1A2A3K4 754 aa12.52□□□□□ -0.4
CUX1-205ENST00000425244 E7EWF7 191 aa12.52□□□□□ -0.4
CUX1-205ENST00000425244 GUCY1B3Q02153 619 aa12.52□□□□□ -0.4
CUX1-205ENST00000425244 DDX60Q8IY21 1712 aaKnown RBP12.52□□□□□ -0.41
CUX1-205ENST00000425244 PFKFB2O60825 505 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 NR1I2O75469 434 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 CCDC158Q5M9N0 1113 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 LUZP1Q86V48 1076 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 NSUN7Q8NE18 718 aaKnown RBP12.52□□□□□ -0.41
CUX1-205ENST00000425244 PGBD1Q96JS3 809 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 FTOQ9C0B1 505 aaKnown RBP eCLIP12.52□□□□□ -0.41
CUX1-205ENST00000425244 CARMIL3Q8ND23 1372 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 UQCRHLA0A096LP55 91 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 UQCRHP07919 91 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 ATP2B3Q16720 1220 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 FAM200AQ8TCP9 573 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 CELF1Q92879 486 aaKnown RBP12.52□□□□□ -0.41
CUX1-205ENST00000425244 OSBP2Q969R2 916 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 XAGE2Q96GT9 111 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 MRVI1Q9Y6F6 885 aa12.52□□□□□ -0.41
CUX1-205ENST00000425244 WTIPA6NIX2 430 aaPredicted RBP12.51□□□□□ -0.41
CUX1-205ENST00000425244 SERPINB2P05120 415 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 ANO6Q4KMQ2 910 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 CTDNEP1O95476 244 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 PI16Q6UXB8 463 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 ILDR1Q86SU0 546 aaPredicted RBP12.51□□□□□ -0.41
CUX1-205ENST00000425244 ANKRD18AQ8IVF6 992 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 AKT1S1Q96B36 256 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 GPHNQ9NQX3 736 aaPredicted RBP12.51□□□□□ -0.41
CUX1-205ENST00000425244 DDX19AQ9NUU7 478 aaKnown RBP12.51□□□□□ -0.41
CUX1-205ENST00000425244 AKAP2Q9Y2D5 859 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 SPEF2Q9C093 1822 aa12.51□□□□□ -0.41
CUX1-205ENST00000425244 PDE8BO95263 885 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 SCARF1Q14162 830 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 PRR5LQ6MZQ0 368 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 SLC51AQ86UW1 340 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 CDC5LQ99459 802 aaKnown RBP12.5□□□□□ -0.41
CUX1-205ENST00000425244 CLSTN2Q9H4D0 955 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 EXOSC10Q01780 885 aaKnown RBP12.5□□□□□ -0.41
CUX1-205ENST00000425244 RIC1Q4ADV7 1423 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 RAB11FIP4Q86YS3 637 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 SMARCC2Q8TAQ2 1214 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 LLPHQ9BRT6 129 aaKnown RBP12.5□□□□□ -0.41
CUX1-205ENST00000425244 ZSCAN16Q9H4T2 348 aaPredicted RBP12.5□□□□□ -0.41
CUX1-205ENST00000425244 CFAP45Q9UL16 551 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 COL4A1P02462 1669 aa12.5□□□□□ -0.41
CUX1-205ENST00000425244 ZAP70P43403 619 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 DDR1Q08345 913 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 SASS6Q6UVJ0 657 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 TAOK2Q9UL54 1235 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 HMGN5P82970 282 aaKnown RBP12.49□□□□□ -0.41
CUX1-205ENST00000425244 CHRNDQ07001 517 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 NOLC1Q14978 699 aaKnown RBP eCLIP12.49□□□□□ -0.413e-6■■□□□ 12.3
CUX1-205ENST00000425244 PDGFDQ9GZP0 370 aaPredicted RBP12.49□□□□□ -0.41
CUX1-205ENST00000425244 CBX8Q9HC52 389 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 FAM13BQ9NYF5 915 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 KIF3AQ9Y496 699 aa12.49□□□□□ -0.41
CUX1-205ENST00000425244 TNS1Q9HBL0 1735 aaKnown RBP12.48□□□□□ -0.41
CUX1-205ENST00000425244 PDIA3P30101 505 aaKnown RBP12.48□□□□□ -0.41
CUX1-205ENST00000425244 SF3B3Q15393 1217 aaKnown RBP12.48□□□□□ -0.41
CUX1-205ENST00000425244 PIBF1Q8WXW3 757 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 CAMKK2Q96RR4 588 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 DNAJC25Q9H1X3 360 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 FBXO3Q9UK99 471 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 PNPLA7Q6ZV29 1317 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 ST5P78524 1137 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 LRRFIP1Q32MZ4 808 aaKnown RBP12.48□□□□□ -0.41
CUX1-205ENST00000425244 DRC7Q8IY82 874 aa12.48□□□□□ -0.41
CUX1-205ENST00000425244 IQSEC3Q9UPP2 1182 aaPredicted RBP12.48□□□□□ -0.41
CUX1-205ENST00000425244 MMP10P09238 476 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 TM4SF1P30408 202 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 BAG6P46379 1132 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 TERF1P54274 439 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 IMMTQ16891 758 aaKnown RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 SLC10A5Q5PT55 438 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 NAA16Q6N069 864 aaPredicted RBP12.47□□□□□ -0.41
CUX1-205ENST00000425244 HOMEZQ8IX15 550 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 VGLL2Q8N8G2 317 aa12.47□□□□□ -0.41
CUX1-205ENST00000425244 MROH5Q6ZUA9 1318 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms