RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 ZNRF3Q9ULT6 936 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 AATKQ6ZMQ8 1374 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 PNPLA6Q8IY17 1366 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 IQSEC2Q5JU85 1478 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ZNF804BA4D1E1 1349 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 SARNPP82979 210 aaKnown RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 SLC9C2Q5TAH2 1124 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CLEC4GQ6UXB4 293 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC97Q96F63 343 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 TIGD1Q96MW7 591 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 C6orf50Q9HD87 102 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 RNF216Q9NWF9 866 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CNOT7Q9UIV1 285 aaKnown RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ADGBQ8N7X0 1667 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 MYCLP12524 364 aaPredicted RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 MICALCLQ6ZW33 695 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CDC42BPGQ6DT37 1551 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ECE2O60344 883 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CTSWP56202 376 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 ALDH1L2Q3SY69 923 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 FASTKD5Q7L8L6 764 aaKnown RBP8.38□□□□□ -1.07
SCN9A-202ENST00000409435 MICALL2Q8IY33 904 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 CHURC1Q8WUH1 139 aa8.38□□□□□ -1.07
SCN9A-202ENST00000409435 INSRP06213 1382 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PALM3A6NDB9 673 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PDE4DQ08499 809 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 CWC27Q6UX04 472 aaKnown RBP8.37□□□□□ -1.07
SCN9A-202ENST00000409435 ERO1AQ96HE7 468 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PREX2Q70Z35 1606 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PLA2R1Q13018 1463 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 CDC45O75419 566 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 CSPG5O95196 566 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 TCHPQ9BT92 498 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 HTATIP2Q9BUP3 242 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 KRT23Q9C075 422 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 MLXIPQ9HAP2 919 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 EXOC6BQ9Y2D4 811 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 RALGAPBQ86X10 1494 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 FLOT1O75955 427 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 DNM2P50570 870 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 IFIT1BQ5T764 474 aaKnown RBP8.37□□□□□ -1.07
SCN9A-202ENST00000409435 ERMNQ8TAM6 284 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 CSRNP1Q96S65 589 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 HINFPQ9BQA5 517 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PRDM10Q9NQV6 1147 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 PRC1O43663 620 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC175P0C221 793 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 COA1Q9GZY4 146 aa8.37□□□□□ -1.07
SCN9A-202ENST00000409435 SOS1Q07889 1333 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-202ENST00000409435 TRIM75PA6NK02 468 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 KCNJ6P48051 423 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 FCGRTP55899 365 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 NFKBIBQ15653 356 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 PARK7Q99497 189 aaKnown RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 MAGEC2Q9UBF1 373 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 SWAP70Q9UH65 585 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 CYP46A1Q9Y6A2 500 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 CTR9Q6PD62 1173 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 STXBP4Q6ZWJ1 553 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 LPIN2Q92539 896 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 KIFC2Q96AC6 838 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 ARHGAP31Q2M1Z3 1444 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 KMT5BQ4FZB7 885 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 BICD2Q8TD16 824 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 RRP36Q96EU6 259 aaKnown RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 OTUD5Q96G74 571 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 NAT10Q9H0A0 1025 aaKnown RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 ERBB4Q15303 1308 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 LETM1O95202 739 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 STIM1Q13586 685 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 CCDC155Q8N6L0 562 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 CEP63Q96MT8 703 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 NUCB2P80303 420 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 SEPT7Q16181 437 aaKnown RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 RNF169Q8NCN4 708 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 COL15A1P39059 1388 aa8.36□□□□□ -1.07
SCN9A-202ENST00000409435 SOS2Q07890 1332 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-202ENST00000409435 SSH2Q76I76 1423 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 DGKZQ13574 1117 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 GCKRQ14397 625 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CWF19L2Q2TBE0 894 aaKnown RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CHADLQ6NUI6 762 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 JMYQ8N9B5 988 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 UBA5Q9GZZ9 404 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ADARB2Q9NS39 739 aaKnown RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 DNMT1P26358 1616 aaKnown RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 MNAT1P51948 309 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 GNPTABQ3T906 1256 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 TMEM67Q5HYA8 995 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 RC3H1Q5TC82 1133 aaKnown RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 STYK1Q6J9G0 422 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CNNM2Q9H8M5 875 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 GBA2Q9HCG7 927 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 GTPBP6O43824 516 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CALM1P0DP23 149 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CALM2P0DP24 149 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CALM3P0DP25 149 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 ERVV-1B6SEH8 477 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 SNAPC2Q13487 334 aa8.35□□□□□ -1.07
SCN9A-202ENST00000409435 CFAP100Q494V2 611 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms