RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CHST3Q7LGC8 479 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 IFNL3Q8IZI9 196 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 CHAMP1Q96JM3 812 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 NAPBQ9H115 298 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 ANKIB1Q9P2G1 1089 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 LEMD3Q9Y2U8 911 aa22.39■■□□□ 1.18
USP39-202ENST00000409025 MYH13Q9UKX3 1938 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 WDR19Q8NEZ3 1342 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 DDR1Q08345 913 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 CHMP4CQ96CF2 233 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 RBM17Q96I25 401 aaKnown RBP22.39■■□□□ 1.17
USP39-202ENST00000409025 NACAP1Q9BZK3 213 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 MTMR6Q9Y217 621 aa22.39■■□□□ 1.17
USP39-202ENST00000409025 POLRMTO00411 1230 aaKnown RBP22.38■■□□□ 1.17
USP39-202ENST00000409025 PRC1O43663 620 aa22.38■■□□□ 1.17
USP39-202ENST00000409025 DTNBO60941 627 aa22.38■■□□□ 1.17
USP39-202ENST00000409025 LCORLQ8N3X6 602 aa22.38■■□□□ 1.17
USP39-202ENST00000409025 ZNF274Q96GC6 653 aaPredicted RBP22.38■■□□□ 1.17
USP39-202ENST00000409025 LLPHQ9BRT6 129 aaKnown RBP22.38■■□□□ 1.17
USP39-202ENST00000409025 NBPF3Q9H094 633 aa22.38■■□□□ 1.17
USP39-202ENST00000409025 SCRN1Q12765 414 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 ZNF827Q17R98 1081 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 AKT1S1Q96B36 256 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 EPB41L4AQ9HCS5 686 aaPredicted RBP22.37■■□□□ 1.17
USP39-202ENST00000409025 SLC4A4Q9Y6R1 1079 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 XDHP47989 1333 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 VPS37CA5D8V6 355 aaPredicted RBP22.37■■□□□ 1.17
USP39-202ENST00000409025 GSG1L2A8MUP6 293 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 ZBTB22O15209 634 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 TBC1D10CQ8IV04 446 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 MIGA1Q8NAN2 632 aa22.37■■□□□ 1.17
USP39-202ENST00000409025 MAGEB6P1A0A0J9YX57 407 aa22.36■■□□□ 1.17
USP39-202ENST00000409025 IRS2Q9Y4H2 1338 aa22.36■■□□□ 1.17
USP39-202ENST00000409025 EVCP57679 992 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 FOXD4L6Q3SYB3 417 aaPredicted RBP22.35■■□□□ 1.17
USP39-202ENST00000409025 NAA16Q6N069 864 aaPredicted RBP22.35■■□□□ 1.17
USP39-202ENST00000409025 FOXD4L3Q6VB84 417 aaPredicted RBP22.35■■□□□ 1.17
USP39-202ENST00000409025 NLGN1Q8N2Q7 840 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 FLAD1Q8NFF5 587 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 NAP1L2Q9ULW6 460 aaPredicted RBP22.35■■□□□ 1.17
USP39-202ENST00000409025 CACNA1SQ13698 1873 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 PRKAB2O43741 272 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 PDIA3P30101 505 aaKnown RBP22.35■■□□□ 1.17
USP39-202ENST00000409025 TDO2P48775 406 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 ADGRA1Q86SQ6 560 aa22.35■■□□□ 1.17
USP39-202ENST00000409025 NCLP19338 710 aaKnown RBP22.34■■□□□ 1.17
USP39-202ENST00000409025 ANTXR2P58335 489 aa22.34■■□□□ 1.17
USP39-202ENST00000409025 TXNRD3Q86VQ6 643 aa22.34■■□□□ 1.17
USP39-202ENST00000409025 JAK2O60674 1132 aa22.33■■□□□ 1.17
USP39-202ENST00000409025 BBOX1O75936 387 aa22.33■■□□□ 1.17
USP39-202ENST00000409025 HOXA10P31260 410 aaPredicted RBP22.33■■□□□ 1.17
USP39-202ENST00000409025 CHAF1AQ13111 956 aaPredicted RBP22.33■■□□□ 1.17
USP39-202ENST00000409025 COL23A1Q86Y22 540 aaPredicted RBP22.33■■□□□ 1.17
USP39-202ENST00000409025 SMARCC2Q8TAQ2 1214 aa22.33■■□□□ 1.17
USP39-202ENST00000409025 CCT2P78371 535 aaKnown RBP22.32■■□□□ 1.16
USP39-202ENST00000409025 HMGN5P82970 282 aaKnown RBP22.32■■□□□ 1.16
USP39-202ENST00000409025 TMED8Q6PL24 325 aaPredicted RBP22.32■■□□□ 1.16
USP39-202ENST00000409025 FAM184AQ8NB25 1140 aa22.32■■□□□ 1.16
USP39-202ENST00000409025 CRAMP1Q96RY5 1269 aa22.32■■□□□ 1.16
USP39-202ENST00000409025 KLRG2A4D1S0 409 aaPredicted RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 MBD3O95983 291 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 GPSM2P81274 684 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 C15orf52Q6ZUT6 534 aaKnown RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 ZNF804AQ7Z570 1209 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 NSUN7Q8NE18 718 aaKnown RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 NSUN4Q96CB9 384 aaKnown RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 RIOK1Q9BRS2 568 aaKnown RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 CNNM2Q9H8M5 875 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 GPHNQ9NQX3 736 aaPredicted RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 KIF3AQ9Y496 699 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 EP400Q96L91 3159 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 CHD4Q14839 1912 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 TIAM2Q8IVF5 1701 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 GOLGA6L3A6NEY3 463 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 ATP2B4P23634 1241 aa22.31■■□□□ 1.16
USP39-202ENST00000409025 SPTY2D1Q68D10 685 aaPredicted RBP22.31■■□□□ 1.16
USP39-202ENST00000409025 KLF18A0A0U1RQI7 1052 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 B4E1Z4 1266 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 MECOMQ03112 1051 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 CTDSPL2Q05D32 466 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 AKNAD1Q5T1N1 836 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 L1TD1Q5T7N2 865 aaKnown RBP22.3■■□□□ 1.16
USP39-202ENST00000409025 CYB5R4Q7L1T6 521 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 CDC37L1Q7L3B6 337 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 TMEM87AQ8NBN3 555 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 GPT2Q8TD30 523 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 DDX11Q96FC9 970 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 KRT23Q9C075 422 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 NSFL1CQ9UNZ2 370 aaKnown RBP22.3■■□□□ 1.16
USP39-202ENST00000409025 NEDD4P46934 1319 aa22.3■■□□□ 1.16
USP39-202ENST00000409025 PTPDC1A2A3K4 754 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 TCHHQ07283 1943 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 MFSD6Q6ZSS7 791 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 USP48Q86UV5 1035 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 SLC51AQ86UW1 340 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 TMEM87BQ96K49 555 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 TNS1Q9HBL0 1735 aaKnown RBP22.29■■□□□ 1.16
USP39-202ENST00000409025 NCOA5Q9HCD5 579 aaKnown RBP22.29■■□□□ 1.16
USP39-202ENST00000409025 BRPF3Q9ULD4 1205 aa22.29■■□□□ 1.16
USP39-202ENST00000409025 ANGEL1Q9UNK9 670 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms