RNA–Protein interactions for RNA: ENST00000394768.6

SYNE2-205, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 11,095 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-205ENST00000394768 TTC36A6NLP5 189 aa8.34□□□□□ -1.07
SYNE2-205ENST00000394768 RASA3Q14644 834 aa8.34□□□□□ -1.07
SYNE2-205ENST00000394768 CCDC62Q6P9F0 684 aa8.34□□□□□ -1.07
SYNE2-205ENST00000394768 ZNF449Q6P9G9 518 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 PTPN23Q9H3S7 1636 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 IL15P40933 162 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 INTS8Q75QN2 995 aaKnown RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 DPH6Q7L8W6 267 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 SDCCAG8Q86SQ7 713 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 MIPOL1Q8TD10 442 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 RBM17Q96I25 401 aaKnown RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 KRT10P13645 584 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 ATP6V1AP38606 617 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 UBE3BQ7Z3V4 1068 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 AQRO60306 1485 aaKnown RBP eCLIP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 PLCD1P51178 756 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 FERMT3Q86UX7 667 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 C16orf45Q96MC5 204 aaPredicted RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 IPO11Q9UI26 975 aaKnown RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 IL16Q14005 1332 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 SLC12A2P55011 1212 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 EIF6P56537 245 aaKnown RBP8.33□□□□□ -1.08
SYNE2-205ENST00000394768 MCTP2Q6DN12 878 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 BRAPQ7Z569 592 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 CPLX3Q8WVH0 158 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 CPLX4Q7Z7G2 160 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 IWS1Q96ST2 819 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 AZI2Q9H6S1 392 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 MAP3K2Q9Y2U5 619 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 TMEM57Q8N5G2 664 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 RAD50Q92878 1312 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 CD109Q6YHK3 1445 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 MAGEB6P1A0A0J9YX57 407 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 CNNM4Q6P4Q7 775 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 DTHD1Q6ZMT9 781 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 GJB2P29033 226 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 MAIP1Q8WWC4 291 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 SIRT1Q96EB6 747 aa8.33□□□□□ -1.08
SYNE2-205ENST00000394768 EBAG9O00559 213 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 RASSF2P50749 326 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 PPFIA1Q13136 1202 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ATP2B3Q16720 1220 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ZC3H15Q8WU90 426 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 LZTS2Q9BRK4 669 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 UTP11Q9Y3A2 253 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ATP5J2-PTCD1G3V325 749 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 HSPA1LP34931 641 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ARID5AQ03989 594 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 NEDD9Q14511 834 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 FAM212AQ96EL1 285 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 GBP1P32455 592 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 TNFAIP1Q13829 316 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 SLC4A4Q9Y6R1 1079 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 KRT3P12035 628 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 RBM10P98175 930 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 PDZD4Q76G19 769 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 BACH2Q9BYV9 841 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 CYP7A1P22680 504 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 B4GALNT4Q76KP1 1039 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 LDHBP07195 334 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 KRT222Q8N1A0 295 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 SEC62Q99442 399 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 SYCE1Q8N0S2 351 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 PABPC4Q13310 644 aaKnown RBP eCLIP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 BIRC3Q13489 604 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 SND1Q7KZF4 910 aaKnown RBP eCLIP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 IQUBQ8NA54 791 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 AFG3L2Q9Y4W6 797 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 TOP2BQ02880 1626 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ANKRD36BQ8N2N9 1353 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ATF7P17544 494 aaPredicted RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 NFKBIAP25963 317 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 CCT2P78371 535 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 MRPS27Q92552 414 aaKnown RBP8.32□□□□□ -1.08
SYNE2-205ENST00000394768 ALG1Q9BT22 464 aa8.32□□□□□ -1.08
SYNE2-205ENST00000394768 H0YCG3 227 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 PARP1P09874 1014 aaKnown RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 HSPA8P11142 646 aaKnown RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 BCRP11274 1271 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 BMP2KLQ5H9B9 411 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 GBP7Q8N8V2 638 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 ZNF219Q9P2Y4 722 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 ANKRD13DQ6ZTN6 518 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 PLCB1Q9NQ66 1216 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 IGF1RP08069 1367 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 POLR2BP30876 1174 aaKnown RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 PPP2R5BQ15173 497 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 MCMDC2Q4G0Z9 681 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 HOXA7P31268 230 aaPredicted RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 TSNAXIP1Q2TAA8 658 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 TRMT1LQ7Z2T5 733 aaKnown RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 ATRIPQ8WXE1 791 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 ZKSCAN3Q9BRR0 538 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 PPP2R5EQ16537 467 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 NUCKS1Q9H1E3 243 aaKnown RBP8.31□□□□□ -1.08
SYNE2-205ENST00000394768 TTC41PQ6P2S7 1318 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 DDB1Q16531 1140 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 ANKFY1Q9P2R3 1169 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 HMGXB3Q12766 1538 aa8.31□□□□□ -1.08
SYNE2-205ENST00000394768 XRCC6P12956 609 aaKnown RBP eCLIP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms