RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 E4F1Q66K89 784 aaPredicted RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 NBPF10Q6P3W6 841 aaKnown RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 RALYLQ86SE5 291 aaKnown RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 NBPF15Q8N660 670 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 SRRTQ9BXP5 876 aaKnown RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 XPO4Q9C0E2 1151 aaKnown RBP11.58□□□□□ -0.56
COL17A1-203ENST00000393211 PAPPAQ13219 1627 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 DCCP43146 1447 aa11.58□□□□□ -0.56
COL17A1-203ENST00000393211 MAP3K15Q6ZN16 1313 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 MYH7P12883 1935 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 KDM4FA0A1W2PPD8 638 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 GOLGA8BA8MQT2 603 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 SMC2O95347 1197 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 CSB-PGBD3P0DP91 1061 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 TRIM28Q13263 835 aaKnown RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 NCAPHQ15003 741 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 LRRC24Q50LG9 513 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 CCDC93Q567U6 631 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 TMC6Q7Z403 805 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ZNF512BQ96KM6 892 aaPredicted RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 PPP1R13BQ96KQ4 1090 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 PLA2G12BQ9BX93 195 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 IFNKQ9P0W0 207 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ZMYM6O95789 1325 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 PHLPP2Q6ZVD8 1323 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ZNF213O14771 459 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 FGAP02671 866 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 PFKFB1P16118 471 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 KMT5BQ4FZB7 885 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 GORABQ5T7V8 394 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 TTLL5Q6EMB2 1281 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ARMCX5Q6P1M9 558 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 CPLX2Q6PUV4 134 aaKnown RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 PROSER2Q86WR7 435 aaPredicted RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 NOL10Q9BSC4 688 aaKnown RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ISCA1Q9BUE6 129 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 TRMT1Q9NXH9 659 aaKnown RBP11.57□□□□□ -0.56
COL17A1-203ENST00000393211 HPSEQ9Y251 543 aa11.57□□□□□ -0.56
COL17A1-203ENST00000393211 ATRNO75882 1429 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 PCDH11XQ9BZA7 1347 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 PCDH11YQ9BZA8 1340 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 KCPQ6ZWJ8 1503 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 A0A0G2JLW4 131 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 FOXP2O15409 715 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 TPM1P09493 284 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 PIP4K2AP48426 406 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-203ENST00000393211 FANCCQ00597 558 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 TRDNQ13061 729 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 WASHC4Q2M389 1173 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 CCDC57Q2TAC2 916 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 CHST3Q7LGC8 479 aa11.56□□□□□ -0.56
COL17A1-203ENST00000393211 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.56□□□□□ -0.56
COL17A1-203ENST00000393211 ZHX1Q9UKY1 873 aaPredicted RBP11.56□□□□□ -0.56
COL17A1-203ENST00000393211 POLR3DP05423 398 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 H2AFXP16104 143 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 SYKP43405 635 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 ANTXR2P58335 489 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 ETF1P62495 437 aaKnown RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 MYL5Q02045 173 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 FKBP4Q02790 459 aaKnown RBP eCLIP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 BMS1Q14692 1282 aaKnown RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 NAA30Q147X3 362 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 NKX1-1Q15270 411 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 TTF1Q15361 905 aaPredicted RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 TTLL7Q6ZT98 887 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 XAGE2Q96GT9 111 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 TMX1Q9H3N1 280 aa11.55□□□□□ -0.56
COL17A1-203ENST00000393211 ANGEL1Q9UNK9 670 aaKnown RBP11.55□□□□□ -0.56
COL17A1-203ENST00000393211 GOLGA6L9A6NEM1 432 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 CUTAO60888 179 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 PCCAP05165 728 aaPredicted RBP11.54□□□□□ -0.56
COL17A1-203ENST00000393211 SLFN14P0C7P3 912 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 ELF2Q15723 593 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 RESP18Q5W5W9 173 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 FBXO38Q6PIJ6 1188 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 TMEM87BQ96K49 555 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 HOOK1Q9UJC3 728 aaKnown RBP11.54□□□□□ -0.56
COL17A1-203ENST00000393211 CCDC9Q9Y3X0 531 aaKnown RBP11.54□□□□□ -0.56
COL17A1-203ENST00000393211 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.54□□□□□ -0.56
COL17A1-203ENST00000393211 TNS2Q63HR2 1409 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 TNS3Q68CZ2 1445 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 STK36Q9NRP7 1315 aa11.54□□□□□ -0.56
COL17A1-203ENST00000393211 KIF28PB7ZC32 967 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 GPAA1O43292 621 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ZSCAN12O43309 604 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ATP8B1O43520 1251 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 CSF1RP07333 972 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 TCIRG1Q13488 830 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 PTPAQ15257 358 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 TERF2Q15554 542 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 OTUD7BQ6GQQ9 843 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 OLFM4Q6UX06 510 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ZNF594Q96JF6 807 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 ALG1Q9BT22 464 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 A0A087WWV3 80 aa11.53□□□□□ -0.56
COL17A1-203ENST00000393211 SH2B2O14492 632 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 WDHD1O75717 1129 aaPredicted RBP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 METAP2P50579 478 aaKnown RBP eCLIP11.53□□□□□ -0.56
COL17A1-203ENST00000393211 UBASH3AP57075 661 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms