RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SGPP1Q9BX95 441 aa1.56□□□□□ -2.16
RNU6-540P-201ENST00000384622 SUGCTQ9HAC7 445 aa1.56□□□□□ -2.16
RNU6-540P-201ENST00000384622 LTBP3Q9NS15 1303 aa1.56□□□□□ -2.16
RNU6-540P-201ENST00000384622 SASH3O75995 380 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 CEACAM5P06731 702 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 FBXO45P0C2W1 286 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 RAB6AP20340 208 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 C1orf53Q5VUE5 145 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 FERMT3Q86UX7 667 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 SPRYD3Q8NCJ5 442 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 C2CD4AQ8NCU7 369 aaPredicted RBP1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 SIRT1Q96EB6 747 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 IFT43Q96FT9 208 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 NSUN5Q96P11 429 aaKnown RBP1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 TMPRSS13Q9BYE2 586 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 MKNK2Q9HBH9 465 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 GCM1Q9NP62 436 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 C19orf73Q9NVV2 129 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 IRAK3Q9Y616 596 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 IRS2Q9Y4H2 1338 aa1.55□□□□□ -2.16
RNU6-540P-201ENST00000384622 TEX51A0A1B0GUA7 166 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 MYOCOSA0A1B0GUC4 107 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 SERTM1A2A2V5 107 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 FAM177BA6PVY3 158 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 PEX10O60683 326 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 KRT10P13645 584 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 MYSM1Q5VVJ2 828 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 ZNF605Q86T29 641 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 ZG16BQ96DA0 208 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 LOXL4Q96JB6 756 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 C1GALT1Q9NS00 363 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 TLR7Q9NYK1 1049 aaKnown RBP1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 PLAGL2Q9UPG8 496 aa1.54□□□□□ -2.16
RNU6-540P-201ENST00000384622 ITGB3P05106 788 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 RAC2P15153 192 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 EPB42P16452 691 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 INHBCP55103 352 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 SH3PXD2AQ5TCZ1 1133 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 CHST13Q8NET6 341 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 SPATA3Q8NHX4 192 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 DVL3Q92997 716 aaPredicted RBP1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 SIGLEC10Q96LC7 697 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 LGR6Q9HBX8 967 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 HCN4Q9Y3Q4 1203 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 SNX11Q9Y5W9 270 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 U3KQE9 123 aa1.53□□□□□ -2.16
RNU6-540P-201ENST00000384622 PSAPP07602 524 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 ITIH2P19823 946 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 EPHA1P21709 976 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 KCNC1P48547 511 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 OXCT1P55809 520 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 SOX4Q06945 474 aaPredicted RBP1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 CEP135Q66GS9 1140 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 TTC9BQ8N6N2 239 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 LINC01356Q8N9X3 169 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 KRTAP1-5Q9BYS1 174 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 PHACTR1Q9C0D0 580 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 IKZF4Q9H2S9 585 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 OSGEPQ9NPF4 335 aa1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 SCHIP1Q9P0W5 487 aaPredicted RBP1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 ZNF330Q9Y3S2 320 aaPredicted RBP1.52□□□□□ -2.17
RNU6-540P-201ENST00000384622 TMEM229AB2RXF0 380 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 OPLAHO14841 1288 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 IKBKBO14920 756 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 SMNDC1O75940 238 aaKnown RBP eCLIP1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 FAM87AP0C7U9 286 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 PIP4K2BP78356 416 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 HIF1AQ16665 826 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 CCDC142Q17RM4 750 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 ATG9BQ674R7 924 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 SEZ6L2Q6UXD5 910 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 WNT8BQ93098 351 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 CCDC120Q96HB5 630 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 SAMD11Q96NU1 681 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 HMX1Q9NP08 348 aaPredicted RBP1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 SH2B1Q9NRF2 756 aaPredicted RBP1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 USP40Q9NVE5 1235 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 DOLKQ9UPQ8 538 aa1.51□□□□□ -2.17
RNU6-540P-201ENST00000384622 BACH1O14867 736 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 DYNC1LI2O43237 492 aaPredicted RBP1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 TSGA10IPQ3SY00 556 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 OXLD1Q5BKU9 147 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 TBCELQ5QJ74 424 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 EXOSC6Q5RKV6 272 aaKnown RBP1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 P3H3Q8IVL6 736 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 SLC7A3Q8WY07 619 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 MYLIPQ8WY64 445 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 KISS1RQ969F8 398 aaPredicted RBP1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 NELL2Q99435 816 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 ZMYND15Q9H091 742 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 TNKS2Q9H2K2 1166 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 CARS2Q9HA77 564 aaKnown RBP1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 DAGLAQ9Y4D2 1042 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 ACTL7BQ9Y614 415 aa1.5□□□□□ -2.17
RNU6-540P-201ENST00000384622 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 ARL4DP49703 201 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 CABP4P57796 275 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 KRTAP15-1Q3LI76 137 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 ZKSCAN2Q63HK3 967 aa1.49□□□□□ -2.17
RNU6-540P-201ENST00000384622 IRF2BP1Q8IU81 584 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms