RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 ZNF396Q96N95 335 aaPredicted RBP18.93■□□□□ 0.62
NKX3-1-201ENST00000380871 FOXP2O15409 715 aa18.93■□□□□ 0.62
NKX3-1-201ENST00000380871 CAVIN2O95810 425 aa18.93■□□□□ 0.62
NKX3-1-201ENST00000380871 ANO10Q9NW15 660 aa18.93■□□□□ 0.62
NKX3-1-201ENST00000380871 ZNF215Q9UL58 517 aaPredicted RBP18.93■□□□□ 0.62
NKX3-1-201ENST00000380871 ISM2Q6H9L7 571 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 BICDL1Q6ZP65 573 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 CEP57L1Q8IYX8 460 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 MRPS27Q92552 414 aaKnown RBP18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 CTNNA3Q9UI47 895 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 PAXBP1Q9Y5B6 917 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 CIAO1O76071 339 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 CTSWP56202 376 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 RBM6P78332 1123 aaKnown RBP18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 SLC9C2Q5TAH2 1124 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 GPR108Q9NPR9 543 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 SEC31BQ9NQW1 1179 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 DENND2AQ9ULE3 1009 aa18.92■□□□□ 0.62
NKX3-1-201ENST00000380871 PHKA1P46020 1223 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 PTPN14Q15678 1187 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 DDB1Q16531 1140 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 NYAP1Q6ZVC0 841 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 NEDD4P46934 1319 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 MCAMP43121 646 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 FGAP02671 866 aa18.91■□□□□ 0.62
NKX3-1-201ENST00000380871 PKD1L3Q7Z443 1732 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 RXRAP19793 462 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 LINC00301Q8NCQ3 95 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 XIRP1Q702N8 1843 aaKnown RBP18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 KIF28PB7ZC32 967 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 NPHP1O15259 732 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 UTP14CQ5TAP6 766 aaKnown RBP18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 NKX2-3Q8TAU0 364 aa18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 ZNF274Q96GC6 653 aaPredicted RBP18.9■□□□□ 0.62
NKX3-1-201ENST00000380871 STK38Q15208 465 aa18.89■□□□□ 0.62
NKX3-1-201ENST00000380871 SF3A1Q15459 793 aaKnown RBP18.89■□□□□ 0.62
NKX3-1-201ENST00000380871 GPAA1O43292 621 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 CCAR2Q8N163 923 aaKnown RBP18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 INCENPQ9NQS7 918 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 RIPOR2Q9Y4F9 1068 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 KLF18A0A0U1RQI7 1052 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 GOLGA8BA8MQT2 603 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 KCNQ2O43526 872 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 SMC2O95347 1197 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 XPO4Q9C0E2 1151 aaKnown RBP18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 RTEL1Q9NZ71 1219 aa18.89■□□□□ 0.61
NKX3-1-201ENST00000380871 UBN2Q6ZU65 1347 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 CSF1RP07333 972 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 IMMTQ16891 758 aaKnown RBP18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 SUSD4Q5VX71 490 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 C8orf76Q96K31 380 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 AIFM3Q96NN9 605 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 MPHOSPH8Q99549 860 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 IFNKQ9P0W0 207 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 HPS5Q9UPZ3 1129 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 TRIM28Q13263 835 aaKnown RBP18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 PTPN21Q16825 1174 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 ADALQ6DHV7 355 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 RALYLQ86SE5 291 aaKnown RBP18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 PIH1D3Q9NQM4 214 aaKnown RBP18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 TOMM22Q9NS69 142 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 ABCC6O95255 1503 aa18.88■□□□□ 0.61
NKX3-1-201ENST00000380871 CCDC24Q8N4L8 307 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 KIAA1468Q9P260 1216 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 PRC1O43663 620 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 ELF2Q15723 593 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 ORC3Q9UBD5 711 aaPredicted RBP18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 GLI3P10071 1580 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 MARCKSP29966 332 aaPredicted RBP18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 ANTXR2P58335 489 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 KMT5BQ4FZB7 885 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 ARMCX5Q6P1M9 558 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 TMC6Q7Z403 805 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 LRRN4CLQ8ND94 238 aa18.87■□□□□ 0.61
NKX3-1-201ENST00000380871 MROH7-TTC4A0A0A0MT08 1334 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 ZNF213O14771 459 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 PDE8AO60658 829 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 CRKLP46109 303 aaKnown RBP18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 NIP7Q9Y221 180 aaKnown RBP eCLIP18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 TNS2Q63HR2 1409 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 FAM182BQ5T319 152 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 E4F1Q66K89 784 aaPredicted RBP18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 CCDC102BQ68D86 513 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 WWC3Q9ULE0 1092 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 NWD2Q9ULI1 1742 aa18.86■□□□□ 0.61
NKX3-1-201ENST00000380871 APPBP2Q92624 585 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 SPTLC2O15270 562 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 NEMFO60524 1076 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 SYCP1Q15431 976 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 MYSM1Q5VVJ2 828 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 NAT10Q9H0A0 1025 aaKnown RBP18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 PDE8BO95263 885 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 LRRFIP1Q32MZ4 808 aaKnown RBP18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 ATL3Q6DD88 541 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 FBXO18Q8NFZ0 1043 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 FEZ1Q99689 392 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 OGFRQ9NZT2 677 aa18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 CGNQ9P2M7 1197 aaKnown RBP18.85■□□□□ 0.61
NKX3-1-201ENST00000380871 ATP1A3P13637 1013 aa18.84■□□□□ 0.61
NKX3-1-201ENST00000380871 LMOD1P29536 600 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms