RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ARAP2Q8WZ64 1704 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 LOC102724428A0A0B4J2F2 783 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 GOLGA8BA8MQT2 603 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 KIF28PB7ZC32 967 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 SIK1P57059 783 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 UBE3CQ15386 1083 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 DDB1Q16531 1140 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 LRRFIP1Q32MZ4 808 aaKnown RBP15.69■□□□□ 0.1
CCDC3-202ENST00000378839 LPIN2Q92539 896 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 AIFM3Q96NN9 605 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 STRBPQ96SI9 672 aaKnown RBP15.69■□□□□ 0.1
CCDC3-202ENST00000378839 KCNF1Q9H3M0 494 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 NEDD4P46934 1319 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 RXRAP19793 462 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 FAM200AQ8TCP9 573 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 DDX19AQ9NUU7 478 aaKnown RBP15.69■□□□□ 0.1
CCDC3-202ENST00000378839 CFAP45Q9UL16 551 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 KCNQ4P56696 695 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 C3orf67Q6ZVT6 689 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 SPATA5Q8NB90 893 aa15.69■□□□□ 0.1
CCDC3-202ENST00000378839 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.69■□□□□ 0.1
CCDC3-202ENST00000378839 UBE2Q2LH0YL09 131 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 NTSR2O95665 410 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 BCAMP50895 628 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 CCAR1Q8IX12 1150 aaKnown RBP15.68■□□□□ 0.1
CCDC3-202ENST00000378839 KLHL34Q8N239 644 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 ENGASEQ8NFI3 743 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 ERCC4Q92889 916 aaPredicted RBP15.68■□□□□ 0.1
CCDC3-202ENST00000378839 MROH5Q6ZUA9 1318 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 RREB1Q92766 1687 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 DNAJC25Q9H1X3 360 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 CLIC4Q9Y696 253 aa15.68■□□□□ 0.1
CCDC3-202ENST00000378839 B4E1Z4 1266 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 UTP14AQ9BVJ6 771 aaKnown RBP15.67■□□□□ 0.1
CCDC3-202ENST00000378839 R3HCC1Q9Y3T6 440 aaKnown RBP15.67■□□□□ 0.1
CCDC3-202ENST00000378839 PRKAB2O43741 272 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 APPP05067 770 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 POLR3DP05423 398 aaPredicted RBP15.67■□□□□ 0.1
CCDC3-202ENST00000378839 CDC27P30260 824 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 MAGEB6Q8N7X4 407 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 SPC24Q8NBT2 197 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 TTF1Q15361 905 aaPredicted RBP15.67■□□□□ 0.1
CCDC3-202ENST00000378839 PTF1AQ7RTS3 328 aa15.67■□□□□ 0.1
CCDC3-202ENST00000378839 CTDSPL2Q05D32 466 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 C11orf57Q6ZUT1 292 aaPredicted RBP15.66■□□□□ 0.1
CCDC3-202ENST00000378839 ARMT1Q9H993 441 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 ORC3Q9UBD5 711 aaPredicted RBP15.66■□□□□ 0.1
CCDC3-202ENST00000378839 PCDHA7Q9UN72 937 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 DOCK2Q92608 1830 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 SMIM22K7EJ46 135 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 SH2B2O14492 632 aaPredicted RBP15.66■□□□□ 0.1
CCDC3-202ENST00000378839 RALYLQ86SE5 291 aaKnown RBP15.66■□□□□ 0.1
CCDC3-202ENST00000378839 FBXO18Q8NFZ0 1043 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 IGDCC4Q8TDY8 1250 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 NIP7Q9Y221 180 aaKnown RBP eCLIP15.66■□□□□ 0.1
CCDC3-202ENST00000378839 BCL9LQ86UU0 1499 aa15.66■□□□□ 0.1
CCDC3-202ENST00000378839 NUTM2BA6NNL0 878 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 NUTM2EB1AL46 878 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 NUTM2AQ8IVF1 878 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 MYL10Q9BUA6 226 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 FAM217BQ9NTX9 383 aaPredicted RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 SPATA31A5Q5VU36 1347 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 SPATA31A7Q8IWB4 1347 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 MBD4O95243 580 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 UQCRFS1P1P0C7P4 283 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 ZSCAN25Q6NSZ9 544 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 CCDC144CPQ8IYA2 1237 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 FAM13BQ9NYF5 915 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 TAF1P21675 1872 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 RRP9O43818 475 aaKnown RBP15.65■□□□□ 0.1
CCDC3-202ENST00000378839 ADGRA1Q86SQ6 560 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 PYCARDQ9ULZ3 195 aa15.65■□□□□ 0.1
CCDC3-202ENST00000378839 WDR19Q8NEZ3 1342 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 GSG1L2A8MUP6 293 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 IFNL3Q8IZI9 196 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 C8orf76Q96K31 380 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 AK7Q96M32 723 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 RTEL1Q9NZ71 1219 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 ANGEL1Q9UNK9 670 aaKnown RBP15.64■□□□□ 0.09
CCDC3-202ENST00000378839 IQSEC3Q9UPP2 1182 aaPredicted RBP15.64■□□□□ 0.09
CCDC3-202ENST00000378839 LCORLQ8N3X6 602 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 LINC00301Q8NCQ3 95 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 PHKBQ93100 1093 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 MPHOSPH8Q99549 860 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 NRBP1Q9UHY1 535 aa15.64■□□□□ 0.09
CCDC3-202ENST00000378839 SLC5A1P13866 664 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 KIAA2012Q0VF49 1180 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 AIDAQ96BJ3 306 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 LY9Q9HBG7 655 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 RANBP6O60518 1105 aaKnown RBP15.63■□□□□ 0.09
CCDC3-202ENST00000378839 ME1P48163 572 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 CHRNDQ07001 517 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 IQCB1Q15051 598 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 APOA5Q6Q788 366 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 PIBF1Q8WXW3 757 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 ZSWIM5Q9P217 1185 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 A0A1B0GVL5 298 aa15.63■□□□□ 0.09
CCDC3-202ENST00000378839 PATL2C9JE40 543 aaKnown RBP15.63■□□□□ 0.09
CCDC3-202ENST00000378839 KIF23Q02241 960 aaPredicted RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms