RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CLASP1Q7Z460 1538 aa17.12■□□□□ 0.33
NPHP4-201ENST00000378156 RIMBP2O15034 1052 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 SCLT1Q96NL6 688 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 TDRD12Q587J7 1177 aaKnown RBP17.11■□□□□ 0.33
NPHP4-201ENST00000378156 BEND3Q5T5X7 828 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 C17orf53Q8N3J3 647 aaPredicted RBP17.11■□□□□ 0.33
NPHP4-201ENST00000378156 APPBP2Q92624 585 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 KIF1BO60333 1816 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 ANKRD62A6NC57 917 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 ME3Q16798 604 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 KBTBD3Q8NAB2 608 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 EAF2Q96CJ1 260 aaPredicted RBP17.11■□□□□ 0.33
NPHP4-201ENST00000378156 SAMM50Q9Y512 469 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 CLTCL1P53675 1640 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 JAK2O60674 1132 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 TCERG1LQ5VWI1 586 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 RMND1Q9NWS8 449 aa17.11■□□□□ 0.33
NPHP4-201ENST00000378156 CHMP4BP1P59074 171 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 GPT2Q8TD30 523 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.1■□□□□ 0.33
NPHP4-201ENST00000378156 V9GYY5 206 aaPredicted RBP17.1■□□□□ 0.33
NPHP4-201ENST00000378156 PRR36Q9H6K5 1346 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 HIBADHP31937 336 aaKnown RBP17.1■□□□□ 0.33
NPHP4-201ENST00000378156 ZSWIM4Q9H7M6 989 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 NEURL1BA8MQ27 555 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 CETN1Q12798 172 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 STXBP4Q6ZWJ1 553 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 FAM114A1Q8IWE2 563 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 ATP7BP35670 1465 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 ERMNQ8TAM6 284 aa17.1■□□□□ 0.33
NPHP4-201ENST00000378156 LEO1Q8WVC0 666 aaPredicted RBP17.1■□□□□ 0.33
NPHP4-201ENST00000378156 N4BP3O15049 544 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 POLR3GO15318 223 aaPredicted RBP17.09■□□□□ 0.33
NPHP4-201ENST00000378156 USO1O60763 962 aaKnown RBP17.09■□□□□ 0.33
NPHP4-201ENST00000378156 C6orf50Q9HD87 102 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 DNAI1Q9UI46 699 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 DESP17661 470 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 SSR1P43307 286 aaKnown RBP17.09■□□□□ 0.33
NPHP4-201ENST00000378156 OTUD7BQ6GQQ9 843 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 TIGD1Q96MW7 591 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 STAT6P42226 847 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 TCIRG1Q13488 830 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 LPIN2Q92539 896 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 TRIM47Q96LD4 638 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 GBP2P32456 591 aaPredicted RBP17.09■□□□□ 0.33
NPHP4-201ENST00000378156 GTF2F1P35269 517 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■■■■■ 27.9
NPHP4-201ENST00000378156 RBM17Q96I25 401 aaKnown RBP17.09■□□□□ 0.33
NPHP4-201ENST00000378156 TM6SF1Q9BZW5 370 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 EXOC1Q9NV70 894 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 IFNKQ9P0W0 207 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 SHROOM2Q13796 1616 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 TET3O43151 1660 aa17.09■□□□□ 0.33
NPHP4-201ENST00000378156 BRAPQ7Z569 592 aa17.08■□□□□ 0.33
NPHP4-201ENST00000378156 A0A0D9SFI3 127 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 FSD2A1L4K1 749 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 OSBPL3Q9H4L5 887 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 TMEM94Q12767 1356 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 FAM160A1Q05DH4 1040 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 TTC6Q86TZ1 520 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 GPAA1O43292 621 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 CETN2P41208 172 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 PAFAH1B1P43034 410 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 MAP2K1Q02750 393 aaPredicted RBP17.08■□□□□ 0.32
NPHP4-201ENST00000378156 RRAGBQ5VZM2 374 aa17.08■□□□□ 0.32
NPHP4-201ENST00000378156 RASEFQ8IZ41 740 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 KRT222Q8N1A0 295 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 STAP2Q9UGK3 403 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 MAP3K4Q9Y6R4 1608 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 SSH2Q76I76 1423 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 ZKSCAN3Q9BRR0 538 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 B4E1Z4 1266 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 MAPK8IP2Q13387 824 aaPredicted RBP17.07■□□□□ 0.32
NPHP4-201ENST00000378156 VEZTQ9HBM0 779 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 TBCAO75347 108 aaKnown RBP17.07■□□□□ 0.32
NPHP4-201ENST00000378156 TAF5LO75529 589 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 UFL1O94874 794 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 RRP36Q96EU6 259 aaKnown RBP17.07■□□□□ 0.32
NPHP4-201ENST00000378156 CLSTN2Q9H4D0 955 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 ROBO2Q9HCK4 1378 aa17.07■□□□□ 0.32
NPHP4-201ENST00000378156 UNC13BO14795 1591 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 ARHGEF25Q86VW2 580 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 JDP2Q8WYK2 163 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 CBX8Q9HC52 389 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 SYCP3Q8IZU3 236 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 TMEM87BQ96K49 555 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 ZHX1Q9UKY1 873 aaPredicted RBP17.06■□□□□ 0.32
NPHP4-201ENST00000378156 IGSF1Q8N6C5 1336 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 TEX11Q8IYF3 940 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 DHX58Q96C10 678 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 IBSPP21815 317 aaPredicted RBP17.06■□□□□ 0.32
NPHP4-201ENST00000378156 ARMT1Q9H993 441 aa17.06■□□□□ 0.32
NPHP4-201ENST00000378156 LIG1P18858 919 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 KRT2P35908 639 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 PROSER3Q2NL68 480 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 GNA11P29992 359 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 NBPF14Q5TI25 921 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.05■□□□□ 0.32
NPHP4-201ENST00000378156 LRRIQ1Q96JM4 1722 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 ATP5JP18859 108 aa17.05■□□□□ 0.32
NPHP4-201ENST00000378156 TRIM21P19474 475 aaKnown RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms