RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 CHMP3Q9Y3E7 222 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 RRP9O43818 475 aaKnown RBP11.29□□□□□ -0.6
TRIM39-202ENST00000376659 IFIT5Q13325 482 aaKnown RBP11.29□□□□□ -0.6
TRIM39-202ENST00000376659 TTC39AQ5SRH9 613 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 CCDC102BQ68D86 513 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 LUZP1Q86V48 1076 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 SHISA4Q96DD7 197 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 NAP1L5Q96NT1 182 aaPredicted RBP11.29□□□□□ -0.6
TRIM39-202ENST00000376659 STARD3NLO95772 234 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 CCDC192P0DO97 292 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 AXDND1Q5T1B0 1012 aaPredicted RBP11.28□□□□□ -0.6
TRIM39-202ENST00000376659 SUSD4Q5VX71 490 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 HSD3B7Q9H2F3 369 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 IRS4O14654 1257 aaPredicted RBP11.28□□□□□ -0.6
TRIM39-202ENST00000376659 RANBP6O60518 1105 aaKnown RBP11.28□□□□□ -0.6
TRIM39-202ENST00000376659 ANO6Q4KMQ2 910 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 STRBPQ96SI9 672 aaKnown RBP11.28□□□□□ -0.6
TRIM39-202ENST00000376659 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 LY9Q9HBG7 655 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 EP400Q96L91 3159 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 MROH5Q6ZUA9 1318 aa11.28□□□□□ -0.6
TRIM39-202ENST00000376659 MSNP26038 577 aaKnown RBP11.27□□□□□ -0.6
TRIM39-202ENST00000376659 CAMK4Q16566 473 aa11.27□□□□□ -0.6
TRIM39-202ENST00000376659 LINC00301Q8NCQ3 95 aa11.27□□□□□ -0.6
TRIM39-202ENST00000376659 ANP32BQ92688 251 aaKnown RBP11.27□□□□□ -0.6
TRIM39-202ENST00000376659 ZNF830Q96NB3 372 aaPredicted RBP11.27□□□□□ -0.6
TRIM39-202ENST00000376659 TTC12Q9H892 705 aaPredicted RBP11.27□□□□□ -0.6
TRIM39-202ENST00000376659 POLR3EQ9NVU0 708 aa11.27□□□□□ -0.6
TRIM39-202ENST00000376659 CCDC9Q9Y3X0 531 aaKnown RBP11.27□□□□□ -0.6
TRIM39-202ENST00000376659 PRC1O43663 620 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 CCT2P78371 535 aaKnown RBP11.27□□□□□ -0.61
TRIM39-202ENST00000376659 CCDC158Q5M9N0 1113 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 SGMS1Q86VZ5 419 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 SPATA31A5Q5VU36 1347 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 SPATA31A7Q8IWB4 1347 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 A0A1W2PQ27 194 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 A0A1W2PQ64 194 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 A0A1W2PQD8 194 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 PDE6AP16499 860 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 CDC27P30260 824 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 KIF23Q02241 960 aaPredicted RBP11.27□□□□□ -0.61
TRIM39-202ENST00000376659 RASGRF1Q13972 1273 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 PTPAQ15257 358 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 PAXIP1Q6ZW49 1069 aaPredicted RBP11.27□□□□□ -0.61
TRIM39-202ENST00000376659 MARCH10Q8NA82 808 aaPredicted RBP11.27□□□□□ -0.61
TRIM39-202ENST00000376659 ZNF384Q8TF68 577 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 THRAP3Q9Y2W1 955 aaKnown RBP11.27□□□□□ -0.61
TRIM39-202ENST00000376659 PNPLA7Q6ZV29 1317 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 NRXN2Q9P2S2 1712 aa11.27□□□□□ -0.61
TRIM39-202ENST00000376659 C17orf53Q8N3J3 647 aaPredicted RBP11.26□□□□□ -0.61
TRIM39-202ENST00000376659 FBXO18Q8NFZ0 1043 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 PCDHA7Q9UN72 937 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 HPSEQ9Y251 543 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 ZNF75DP51815 510 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 FKBP4Q02790 459 aaKnown RBP eCLIP11.26□□□□□ -0.61
TRIM39-202ENST00000376659 PUM3Q15397 648 aaKnown RBP11.26□□□□□ -0.61
TRIM39-202ENST00000376659 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.26□□□□□ -0.61
TRIM39-202ENST00000376659 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 GJB4Q9NTQ9 266 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 CLIC4Q9Y696 253 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 ZNF532Q9HCE3 1301 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 GPTP24298 496 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 KIAA2012Q0VF49 1180 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 CKAP2LQ8IYA6 745 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 KCND1Q9NSA2 647 aa11.26□□□□□ -0.61
TRIM39-202ENST00000376659 GREB1LQ9C091 1923 aaPredicted RBP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CCDC144BQ3MJ40 725 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 ADGRA1Q86SQ6 560 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CCDC144CPQ8IYA2 1237 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 LPIN2Q92539 896 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CCDC85AQ96PX6 553 aaPredicted RBP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 BPIFA3Q9BQP9 254 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 TNMDQ9H2S6 317 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 STK36Q9NRP7 1315 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CFAP45Q9UL16 551 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 ANKRD18BA2A2Z9 1011 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 FAM160A1Q05DH4 1040 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 DZIP3Q86Y13 1208 aaKnown RBP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CTNNA3Q9UI47 895 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 GSG1L2A8MUP6 293 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 U2AF2P26368 475 aaKnown RBP eCLIP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 CRKLP46109 303 aaKnown RBP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 HAND2P61296 217 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 IMMTQ16891 758 aaKnown RBP11.25□□□□□ -0.61
TRIM39-202ENST00000376659 C3orf67Q6ZVT6 689 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 ZNF710Q8N1W2 664 aa11.25□□□□□ -0.61
TRIM39-202ENST00000376659 NOLC1Q14978 699 aaKnown RBP eCLIP11.24□□□□□ -0.61
TRIM39-202ENST00000376659 METTL24Q5JXM2 366 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 BARGINQ6ZT62 677 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 ANKRD31Q8N7Z5 1873 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 WDHD1O75717 1129 aaPredicted RBP11.24□□□□□ -0.61
TRIM39-202ENST00000376659 EVA1CP58658 441 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 TTF1Q15361 905 aaPredicted RBP11.24□□□□□ -0.61
TRIM39-202ENST00000376659 ADALQ6DHV7 355 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 APOA5Q6Q788 366 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 SASS6Q6UVJ0 657 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 LDHAL6AQ6ZMR3 332 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 NCOA7Q8NI08 942 aa11.24□□□□□ -0.61
TRIM39-202ENST00000376659 UBE2Q2LH0YL09 131 aa11.23□□□□□ -0.61
TRIM39-202ENST00000376659 YEATS4O95619 227 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms