RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PGBD1Q96JS3 809 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 COPRSQ9NQ92 184 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 RGL1Q9NZL6 768 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 TPX2Q9ULW0 747 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 HIP1O00291 1037 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 TRIM37O94972 964 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 RAPGEF3O95398 923 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CALM1P0DP23 149 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CALM2P0DP24 149 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CALM3P0DP25 149 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 RALGDSQ12967 914 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 IWS1Q96ST2 819 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 RASAL2Q9UJF2 1139 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CLCA2Q9UQC9 943 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 IVNS1ABPQ9Y6Y0 642 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 HIP1RO75146 1068 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SNW1Q13573 536 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 ZKSCAN2Q63HK3 967 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 ALKBH2Q6NS38 261 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 DZIP3Q86Y13 1208 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 STMN4Q9H169 189 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 DMAP1Q9NPF5 467 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 POLIQ9UNA4 740 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CYP46A1Q9Y6A2 500 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 ROCK1Q13464 1354 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 LMNAP02545 664 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 GUCY1B3Q02153 619 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 TRIM32Q13049 653 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 PTK2BQ14289 1009 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 NEDD9Q14511 834 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SMARCC2Q8TAQ2 1214 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 DONSONQ9NYP3 566 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CPSF2Q9P2I0 782 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 HLA-DOAP06340 250 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 NBPF7P0C2Y1 421 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 PDCP20941 246 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 EXOC8Q8IYI6 725 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 NGLY1Q96IV0 654 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CUL3Q13618 768 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 PATL1Q86TB9 770 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SLF2Q8IX21 1173 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 MED10Q9BTT4 135 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CTAGE9A4FU28 777 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SURF6O75683 361 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 HMOX1P09601 288 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 LONP1P36776 959 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 CBFBQ13951 182 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 NFE2L2Q16236 605 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 HS6ST3Q8IZP7 471 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SDCCAG3Q96C92 435 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 UPF3BQ9BZI7 483 aaKnown RBP5.19□□□□□ -1.58
SCN1A-202ENST00000375405 SLITRK6Q9H5Y7 841 aa5.19□□□□□ -1.58
SCN1A-202ENST00000375405 BNIP3LO60238 219 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 SAT1P21673 171 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 SFPQP23246 707 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ABTB2Q8N961 1025 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 TEKT4Q8WW24 435 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 PIK3R5Q8WYR1 880 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 RABEP2Q9H5N1 569 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 PRDM5Q9NQX1 630 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 NOP56O00567 594 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ORC4O43929 436 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 KRT7P08729 469 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ARL3P36405 182 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 IRX4P78413 519 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 TYRO3Q06418 890 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 KCNG4Q8TDN1 519 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ZBED2Q9BTP6 218 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 VCX3AQ9NNX9 186 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 SERTAD1Q9UHV2 236 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 MTUS1Q9ULD2 1270 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 MYBBP1AQ9BQG0 1328 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 APAF1O14727 1248 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 LACTBP83111 547 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 STRN3Q13033 797 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 DDX42Q86XP3 938 aaKnown RBP eCLIP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 CENPSQ8N2Z9 138 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 FBXO18Q8NFZ0 1043 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ZC3H15Q8WU90 426 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ARHGEF2Q92974 986 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 PAWRQ96IZ0 340 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 GSDMAQ96QA5 445 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 UIMC1Q96RL1 719 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ATG3Q9NT62 314 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 CACNA2D2Q9NY47 1150 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 KIF15Q9NS87 1388 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 HMGB2P26583 209 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ARSJQ5FYB0 599 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 BCL2L14Q9BZR8 327 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 TYW5A2RUC4 315 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 CENPAP49450 140 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 PPP6R3Q5H9R7 873 aaPredicted RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 SKAP1Q86WV1 359 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ASZ1Q8WWH4 475 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ATP6V0A2Q9Y487 856 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ASAP2O43150 1006 aa5.18□□□□□ -1.58
SCN1A-202ENST00000375405 CARSP49589 748 aaKnown RBP5.18□□□□□ -1.58
SCN1A-202ENST00000375405 ST13P50502 369 aaKnown RBP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms