RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 SAFB2Q14151 953 aaKnown RBP eCLIP7.4□□□□□ -1.22
UBR4-204ENST00000375254 PRPF31Q8WWY3 499 aaKnown RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 TCP11L1Q9NUJ3 509 aa7.4□□□□□ -1.22
UBR4-204ENST00000375254 SPTLC3Q9NUV7 552 aa7.4□□□□□ -1.22
UBR4-204ENST00000375254 TACC3Q9Y6A5 838 aa7.4□□□□□ -1.22
UBR4-204ENST00000375254 TUBA3CQ13748 450 aa7.4□□□□□ -1.22
UBR4-204ENST00000375254 PRPF38AQ8NAV1 312 aaKnown RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 LEO1Q8WVC0 666 aaPredicted RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 LLPHQ9BRT6 129 aaKnown RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 EFHD1Q9BUP0 239 aa7.4□□□□□ -1.22
UBR4-204ENST00000375254 ZSCAN20P17040 1043 aaPredicted RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 SPTY2D1Q68D10 685 aaPredicted RBP7.4□□□□□ -1.22
UBR4-204ENST00000375254 TMCC1O94876 653 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 AMPHP49418 695 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 RARSP54136 660 aaKnown RBP7.4□□□□□ -1.23
UBR4-204ENST00000375254 RAD51AP2Q09MP3 1159 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 DENND2CQ68D51 928 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 LRRC8AQ8IWT6 810 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 EVI5LQ96CN4 794 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 C16orf87Q6PH81 154 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 ZNF287Q9HBT7 754 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 EXOC1Q9NV70 894 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 I3L4J1 428 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 HNRNPCL1O60812 293 aaKnown RBP7.4□□□□□ -1.23
UBR4-204ENST00000375254 RHOXF2BP0C7M4 288 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 RIPPLY1Q0D2K3 151 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 USP37Q86T82 979 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 USP33Q8TEY7 942 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 RHOXF2Q9BQY4 288 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 BRAPQ7Z569 592 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 PSMA7O14818 248 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 C6orf118Q5T5N4 469 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 PIK3R5Q8WYR1 880 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 KIFC3Q9BVG8 833 aa7.4□□□□□ -1.23
UBR4-204ENST00000375254 H0YC42 278 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 APOA1P02647 267 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 EIF3BP55884 814 aaKnown RBP7.39□□□□□ -1.23
UBR4-204ENST00000375254 SELENOSQ9BQE4 189 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 HSPA9P38646 679 aaKnown RBP7.39□□□□□ -1.23
UBR4-204ENST00000375254 VPS37DQ86XT2 251 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 CCDC84Q86UT8 332 aaPredicted RBP7.39□□□□□ -1.23
UBR4-204ENST00000375254 DNAJC25Q9H1X3 360 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 TRAK1Q9UPV9 953 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 SAR1BQ9Y6B6 198 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 RGS16O15492 202 aaPredicted RBP7.39□□□□□ -1.23
UBR4-204ENST00000375254 APOBRQ0VD83 1088 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 FRA10AC1Q70Z53 315 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 CHGBP05060 677 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 CYP2C19P33261 490 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 BHMTQ93088 406 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 KIF1BPQ96EK5 621 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 PDE11AQ9HCR9 933 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 C3orf20Q8ND61 904 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 KIFAP3Q92845 792 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.39□□□□□ -1.23
UBR4-204ENST00000375254 BCAR3O75815 825 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 FCHSD2O94868 740 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 GLE1Q53GS7 698 aaKnown RBP7.39□□□□□ -1.23
UBR4-204ENST00000375254 TRIM42Q8IWZ5 723 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 FAM186BQ8IYM0 893 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 MAIP1Q8WWC4 291 aa7.39□□□□□ -1.23
UBR4-204ENST00000375254 PARP9Q8IXQ6 854 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 RUBCNQ92622 972 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 ALDH1L1O75891 902 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 MRPL40Q9NQ50 206 aaKnown RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 ELF1P32519 619 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 CCDC14Q49A88 953 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 MCF2LO15068 1137 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 RBM27Q9P2N5 1060 aaKnown RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 CCDC144AA2RUR9 1427 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 KLHL29Q96CT2 875 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 NUB1Q9Y5A7 615 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 ARHGAP4P98171 946 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 KPNB1Q14974 876 aaKnown RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 TAF11Q15544 211 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.38□□□□□ -1.23
UBR4-204ENST00000375254 MORC4Q8TE76 937 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 CTAGE3PQ8IX95 158 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 DKK3Q9UBP4 350 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 CCDC93Q567U6 631 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 RGL1Q9NZL6 768 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 GUCA1BQ9UMX6 200 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 CCDC122Q5T0U0 273 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 NEK11Q8NG66 645 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 IFNKQ9P0W0 207 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 BIRC3Q13489 604 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 CROCCP3Q8IVE0 287 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 VPS8Q8N3P4 1428 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 ZNF483Q8TF39 744 aaPredicted RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 HIC2Q96JB3 615 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 TCP1P17987 556 aaKnown RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 PLCB4Q15147 1175 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.38□□□□□ -1.23
UBR4-204ENST00000375254 MKL2Q9ULH7 1088 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 KIF27Q86VH2 1401 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 ADCY3O60266 1144 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 LONP1P36776 959 aaKnown RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 CCDC13Q8IYE1 715 aa7.38□□□□□ -1.23
UBR4-204ENST00000375254 ZNF513Q8N8E2 541 aaPredicted RBP7.38□□□□□ -1.23
UBR4-204ENST00000375254 SPZ1Q9BXG8 430 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms