RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 GRAPLQ8TC17 118 aaPredicted RBP21.28■■□□□ 1
HLA-DQB1-201ENST00000374943 CHMP4CQ96CF2 233 aa21.28■■□□□ 1
HLA-DQB1-201ENST00000374943 ZNF274Q96GC6 653 aaPredicted RBP21.28■■□□□ 1
HLA-DQB1-201ENST00000374943 NBPF3Q9H094 633 aa21.28■■□□□ 1
HLA-DQB1-201ENST00000374943 TNS1Q9HBL0 1735 aaKnown RBP21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 MBD4O95243 580 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 MCM5P33992 734 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 STK3Q13188 491 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 TXNRD1Q16881 649 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 L1TD1Q5T7N2 865 aaKnown RBP21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 CHAMP1Q96JM3 812 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 LRP2BPQ9P2M1 347 aa21.27■■□□□ 1
HLA-DQB1-201ENST00000374943 IRS2Q9Y4H2 1338 aa21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LRRC37AA6NMS7 1700 aa21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 MBD3O95983 291 aa21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 SCRN1Q12765 414 aa21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LARP1BQ659C4 914 aaKnown RBP21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 SMARCC2Q8TAQ2 1214 aa21.26■□□□□ 0.99
HLA-DQB1-201ENST00000374943 ANKRD31Q8N7Z5 1873 aa21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 WTIPA6NIX2 430 aaPredicted RBP21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 APOBRQ0VD83 1088 aa21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 CRY2Q49AN0 593 aa21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 RALYLQ86SE5 291 aaKnown RBP21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 VPS37DQ86XT2 251 aa21.25■□□□□ 0.99
HLA-DQB1-201ENST00000374943 IFNL3Q8IZI9 196 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 PROM2Q8N271 834 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 GPT2Q8TD30 523 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 EPB41L4AQ9HCS5 686 aaPredicted RBP21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 SRCAPQ6ZRS2 3230 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 GOLGA6L3A6NEY3 463 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 PLSCR1O15162 318 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 PRC1O43663 620 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 APPP05067 770 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 ANTXR2P58335 489 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 ST5P78524 1137 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 TMED8Q6PL24 325 aaPredicted RBP21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 TBC1D10CQ8IV04 446 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 ARMT1Q9H993 441 aa21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 IQSEC3Q9UPP2 1182 aaPredicted RBP21.24■□□□□ 0.99
HLA-DQB1-201ENST00000374943 GSG1L2A8MUP6 293 aa21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 SERPINB2P05120 415 aa21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 PDIA3P30101 505 aaKnown RBP21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 TRDNQ13061 729 aa21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 DUOX1Q9NRD9 1551 aa21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LAMB1P07942 1786 aa21.23■□□□□ 0.99
HLA-DQB1-201ENST00000374943 VPS37CA5D8V6 355 aaPredicted RBP21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 KLRK1P26718 216 aa21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 HIBADHP31937 336 aaKnown RBP21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LCORLQ8N3X6 602 aa21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 NSUN7Q8NE18 718 aaKnown RBP21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 NAPBQ9H115 298 aa21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LEMD3Q9Y2U8 911 aa21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 LTBP1Q14766 1721 aa21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 BAZ2AQ9UIF9 1905 aaKnown RBP21.22■□□□□ 0.99
HLA-DQB1-201ENST00000374943 JAK2O60674 1132 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 IGSF3O75054 1194 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 CYP7A1P22680 504 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 HMGN5P82970 282 aaKnown RBP21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 NACAP1Q9BZK3 213 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 RAI14Q9P0K7 980 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 ABCF2Q9UG63 623 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 SALL1Q9NSC2 1324 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 CDC37L1Q7L3B6 337 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 CHST3Q7LGC8 479 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 XDHP47989 1333 aa21.21■□□□□ 0.99
HLA-DQB1-201ENST00000374943 C15orf52Q6ZUT6 534 aaKnown RBP21.2■□□□□ 0.98
HLA-DQB1-201ENST00000374943 RPGRQ92834 1020 aaKnown RBP21.2■□□□□ 0.98
HLA-DQB1-201ENST00000374943 SLC4A4Q9Y6R1 1079 aa21.2■□□□□ 0.98
HLA-DQB1-201ENST00000374943 POLRMTO00411 1230 aaKnown RBP21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 CTDNEP1O95476 244 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 ZNF445P59923 1031 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 DDR1Q08345 913 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 CSPP1Q1MSJ5 1256 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 DEFB132Q7Z7B7 95 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 ADGRA1Q86SQ6 560 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 USP48Q86UV5 1035 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 KIF3AQ9Y496 699 aa21.19■□□□□ 0.98
HLA-DQB1-201ENST00000374943 MAGEB6P1A0A0J9YX57 407 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 KLRG2A4D1S0 409 aaPredicted RBP21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 DTNBO60941 627 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 CAVIN1Q6NZI2 390 aaKnown RBP21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 AKT1S1Q96B36 256 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 TMEM87BQ96K49 555 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 RIOK1Q9BRS2 568 aaKnown RBP21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 CNNM2Q9H8M5 875 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 CNPY2Q9Y2B0 182 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 PTPDC1A2A3K4 754 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 HOXA10P31260 410 aaPredicted RBP21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 STAG1Q8WVM7 1258 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 RBM17Q96I25 401 aaKnown RBP21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 TFCP2L1Q9NZI6 479 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 ECM29Q5VYK3 1845 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 NEDD4P46934 1319 aa21.18■□□□□ 0.98
HLA-DQB1-201ENST00000374943 PRKAB2O43741 272 aa21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 NCLP19338 710 aaKnown RBP21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 TDO2P48775 406 aa21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 FOXD4L6Q3SYB3 417 aaPredicted RBP21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 NAA16Q6N069 864 aaPredicted RBP21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 FOXD4L3Q6VB84 417 aaPredicted RBP21.17■□□□□ 0.98
HLA-DQB1-201ENST00000374943 MIGA1Q8NAN2 632 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms