RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 ASXL1Q8IXJ9 1541 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 VWA3AA6NCI4 1184 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 YTHDC2Q9H6S0 1430 aaKnown RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 AOPEPQ8N6M6 819 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 CREB3L3Q68CJ9 461 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 MRPS27Q92552 414 aaKnown RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 TTC12Q9H892 705 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 SH3TC1Q8TE82 1336 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 KRT9P35527 623 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 USP48Q86UV5 1035 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 PKNOX2Q96KN3 472 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 IQCGQ9H095 443 aaKnown RBP17.61■□□□□ 0.41
PTPRF-201ENST00000359947 DUOX2Q9NRD8 1548 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 PUM3Q15397 648 aaKnown RBP17.61■□□□□ 0.41
PTPRF-201ENST00000359947 ZNF830Q96NB3 372 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-201ENST00000359947 FNBP1Q96RU3 617 aa17.61■□□□□ 0.41
PTPRF-201ENST00000359947 APBB1IPQ7Z5R6 666 aaPredicted RBP17.61■□□□□ 0.41
PTPRF-201ENST00000359947 UBXN1Q04323 297 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-201ENST00000359947 LGR6Q9HBX8 967 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 UHRF1BP1Q6BDS2 1440 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 RALGAPBQ86X10 1494 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 SPTLC2O15270 562 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 CTAGE1Q96RT6 745 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 CBX1P83916 185 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 ARHGAP45Q92619 1136 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 CYLC1P35663 651 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-201ENST00000359947 CCDC171Q6TFL3 1326 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 PDE8AO60658 829 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 NDUFB9Q9Y6M9 179 aa17.6■□□□□ 0.41
PTPRF-201ENST00000359947 CCT6AP40227 531 aaKnown RBP17.59■□□□□ 0.41
PTPRF-201ENST00000359947 PAGR1Q9BTK6 254 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 RTL1A6NKG5 1358 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 ATP10BO94823 1461 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 RPRD2Q5VT52 1461 aaKnown RBP17.59■□□□□ 0.41
PTPRF-201ENST00000359947 NSMFQ6X4W1 530 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 MAK16Q9BXY0 300 aaKnown RBP17.59■□□□□ 0.41
PTPRF-201ENST00000359947 DACT1Q9NYF0 836 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 ATP2C2O75185 946 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 XAGE2Q96GT9 111 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 SELENOOQ9BVL4 669 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 SLAIN2Q9P270 581 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 H7C1D1 291 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 RASA3Q14644 834 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 CEP85Q6P2H3 762 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 MAPKAPK5Q8IW41 473 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 DNAJC25Q9H1X3 360 aa17.59■□□□□ 0.41
PTPRF-201ENST00000359947 NEK11Q8NG66 645 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 PLBD2Q8NHP8 589 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 KIFC2Q96AC6 838 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 CDCA7Q9BWT1 371 aaPredicted RBP17.58■□□□□ 0.41
PTPRF-201ENST00000359947 CNGA1P29973 690 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 G2E3Q7L622 706 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 RAB3IL1Q8TBN0 382 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 FRMD4BQ9Y2L6 1034 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 TRAPPC8Q9Y2L5 1435 aa17.58■□□□□ 0.41
PTPRF-201ENST00000359947 IRX3P78415 501 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-201ENST00000359947 PARP10Q53GL7 1025 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 FAM170AA1A519 330 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 CPA1P15085 419 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 TGFBRAP1Q8WUH2 860 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 KIF4AO95239 1232 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 ZFP91Q96JP5 570 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-201ENST00000359947 NACA2Q9H009 215 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 AK2P54819 239 aa17.58■□□□□ 0.4
PTPRF-201ENST00000359947 FAM47CQ5HY64 1035 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 SREK1Q8WXA9 508 aaKnown RBP17.57■□□□□ 0.4
PTPRF-201ENST00000359947 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.57■□□□□ 0.46e-6■■□□□ 12.8
PTPRF-201ENST00000359947 CAPZA3Q96KX2 299 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 RBM28Q9NW13 759 aaKnown RBP17.57■□□□□ 0.4
PTPRF-201ENST00000359947 SMIM23A6NLE4 172 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 DLGAP5Q15398 846 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 DNAJC10Q8IXB1 793 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 CTDSPL2Q05D32 466 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 BBXQ8WY36 941 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-201ENST00000359947 PPM1EQ8WY54 764 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 ZSCAN23Q3MJ62 389 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 CCDC155Q8N6L0 562 aa17.57■□□□□ 0.4
PTPRF-201ENST00000359947 SH3BP5O60239 455 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 NCAPH2Q6IBW4 605 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 PIK3AP1Q6ZUJ8 805 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 DDX21Q9NR30 783 aaKnown RBP eCLIP17.56■□□□□ 0.4
PTPRF-201ENST00000359947 TRPM2O94759 1503 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 SLC1A4P43007 532 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 HDAC1Q13547 482 aaPredicted RBP17.56■□□□□ 0.4
PTPRF-201ENST00000359947 ZBED4O75132 1171 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 CCDC114Q96M63 670 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 ERCC3P19447 782 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 CEP112Q8N8E3 955 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 ITSN2Q9NZM3 1697 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 TTC41PQ6P2S7 1318 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 A0A1W2PP64 1363 aa17.56■□□□□ 0.4
PTPRF-201ENST00000359947 CFBP00751 764 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 GTF2IP78347 998 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 MXRA7P84157 204 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 CKAP4Q07065 602 aaKnown RBP17.55■□□□□ 0.4
PTPRF-201ENST00000359947 RAD51AP2Q09MP3 1159 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 WDR44Q5JSH3 913 aa17.55■□□□□ 0.4
PTPRF-201ENST00000359947 DHX32Q7L7V1 743 aaKnown RBP17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms