RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 KAZALD1Q96I82 304 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 USP28Q96RU2 1077 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 PPP2R3AQ06190 1150 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 GOLGA8FQ08AF8 430 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 GOLGA8DPQ0D2H9 430 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 KCNB2Q92953 911 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 CACNA1FO60840 1977 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 UTYO14607 1347 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 UBASH3AP57075 661 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 EVA1CP58658 441 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 PTPN12Q05209 780 aaKnown RBP11.47□□□□□ -0.57
RNF40-202ENST00000357890 SCRN1Q12765 414 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 CAGE1Q8TC20 777 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 PGBD1Q96JS3 809 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 MYCBPQ99417 103 aaPredicted RBP11.47□□□□□ -0.57
RNF40-202ENST00000357890 JRKLQ9Y4A0 524 aa11.47□□□□□ -0.57
RNF40-202ENST00000357890 MARCKSP29966 332 aaPredicted RBP11.46□□□□□ -0.57
RNF40-202ENST00000357890 SLFNL1Q499Z3 407 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 BANK1Q8NDB2 785 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 SMARCC1Q92922 1105 aaPredicted RBP11.46□□□□□ -0.57
RNF40-202ENST00000357890 SECISBP2LQ93073 1101 aaKnown RBP11.46□□□□□ -0.57
RNF40-202ENST00000357890 LZTFL1Q9NQ48 299 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 KLF18A0A0U1RQI7 1052 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 FAM160A1Q05DH4 1040 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 HAUS7Q99871 368 aa11.46□□□□□ -0.57
RNF40-202ENST00000357890 XPO4Q9C0E2 1151 aaKnown RBP11.46□□□□□ -0.57
RNF40-202ENST00000357890 PDIA6Q15084 440 aa11.46□□□□□ -0.58
RNF40-202ENST00000357890 RUFY1Q96T51 708 aa11.46□□□□□ -0.58
RNF40-202ENST00000357890 ZNF335Q9H4Z2 1342 aaPredicted RBP11.46□□□□□ -0.58
RNF40-202ENST00000357890 CT47A1Q5JQC4 288 aaPredicted RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 HELLSQ9NRZ9 838 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 FAM208AQ9UK61 1670 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 IDH1O75874 414 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 KIAA0754O94854 1291 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 COL9A3Q14050 684 aaPredicted RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 RRP12Q5JTH9 1297 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 ICE2Q659A1 982 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 TDRD7Q8NHU6 1098 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 PPP1R13BQ96KQ4 1090 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 EFCC1Q9HA90 598 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 AKAP2Q9Y2D5 859 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 RGPD8O14715 1765 aaPredicted RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 DNAJC21Q5F1R6 531 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 CCDC82Q8N4S0 544 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 LLPHQ9BRT6 129 aaKnown RBP11.45□□□□□ -0.58
RNF40-202ENST00000357890 FUCA2Q9BTY2 467 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 RAI14Q9P0K7 980 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 NWD1Q149M9 1564 aa11.45□□□□□ -0.58
RNF40-202ENST00000357890 JMYQ8N9B5 988 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 GOLGA1Q92805 767 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ZNF594Q96JF6 807 aaPredicted RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 GDAP1L1Q96MZ0 367 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 ZNF213O14771 459 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 CBFA2T2O43439 604 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ST3GAL1Q11201 340 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 KIF6Q6ZMV9 814 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 DDX17Q92841 729 aaKnown RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 OVOS2A0A0G2JMS6 1433 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 PXDNQ92626 1479 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 SPTLC2O15270 562 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 USP8P40818 1118 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ETF1P62495 437 aaKnown RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 PPARDQ03181 441 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ZCRB1Q8TBF4 217 aaKnown RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 CRACR2AQ9BSW2 395 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 ALDH8A1Q9H2A2 487 aaPredicted RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 PDE11AQ9HCR9 933 aa11.44□□□□□ -0.58
RNF40-202ENST00000357890 XRN1Q8IZH2 1706 aaKnown RBP11.44□□□□□ -0.58
RNF40-202ENST00000357890 SAFBQ15424 915 aaKnown RBP eCLIP11.43□□□□□ -0.58
RNF40-202ENST00000357890 TSGA10IPQ3SY00 556 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 MICU3Q86XE3 530 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 LMTK3Q96Q04 1460 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 EYA2O00167 538 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 RNF113AO15541 343 aaKnown RBP11.43□□□□□ -0.58
RNF40-202ENST00000357890 RXRAP19793 462 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 ANKRD20A12PQ8NF67 263 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 GOLGA5Q8TBA6 731 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.43□□□□□ -0.582e-6■□□□□ 10.9
RNF40-202ENST00000357890 CNNM1Q9NRU3 951 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 RESTQ13127 1097 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 KLHL10Q6JEL2 608 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 PPFIBP1Q86W92 1011 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 LRRN4CLQ8ND94 238 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 KCNG4Q8TDN1 519 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 ZNF526Q8TF50 670 aaPredicted RBP11.43□□□□□ -0.58
RNF40-202ENST00000357890 STRN4Q9NRL3 753 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 SLAIN2Q9P270 581 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 MED23Q9ULK4 1368 aa11.43□□□□□ -0.58
RNF40-202ENST00000357890 E7EWF7 191 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 PRC1O43663 620 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 KIF5CO60282 957 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 TDO2P48775 406 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 LIG3P49916 1009 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 NAA16Q6N069 864 aaPredicted RBP11.42□□□□□ -0.58
RNF40-202ENST00000357890 CCDC91Q7Z6B0 441 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 DSCC1Q9BVC3 393 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 FAM107BQ9H098 131 aa11.42□□□□□ -0.58
RNF40-202ENST00000357890 HOOK1Q9UJC3 728 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms