RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SPC24Q8NBT2 197 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 INCENPQ9NQS7 918 aa22.66■■□□□ 1.22
COL9A3-201ENST00000343916 WNK3Q9BYP7 1800 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 CPLX1O14810 134 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 CAMTA2O94983 1202 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 POLR3DP05423 398 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-201ENST00000343916 RXRAP19793 462 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 AIDAQ96BJ3 306 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 ORC3Q9UBD5 711 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-201ENST00000343916 TAOK2Q9UL54 1235 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 ATRNO75882 1429 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 KIAA2012Q0VF49 1180 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 SASS6Q6UVJ0 657 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 C8orf76Q96K31 380 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 ZNF396Q96N95 335 aaPredicted RBP22.65■■□□□ 1.22
COL9A3-201ENST00000343916 DNAJC25Q9H1X3 360 aa22.65■■□□□ 1.22
COL9A3-201ENST00000343916 NUTM2BA6NNL0 878 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-201ENST00000343916 NUTM2EB1AL46 878 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-201ENST00000343916 B4E1Z4 1266 aa22.64■■□□□ 1.21
COL9A3-201ENST00000343916 SLC5A1P13866 664 aa22.64■■□□□ 1.21
COL9A3-201ENST00000343916 ME1P48163 572 aa22.64■■□□□ 1.21
COL9A3-201ENST00000343916 NUTM2AQ8IVF1 878 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-201ENST00000343916 MAGEB6Q8N7X4 407 aa22.64■■□□□ 1.21
COL9A3-201ENST00000343916 SENP2Q9HC62 589 aa22.64■■□□□ 1.21
COL9A3-201ENST00000343916 NIP7Q9Y221 180 aaKnown RBP eCLIP22.64■■□□□ 1.214e-6■□□□□ 9.4
COL9A3-201ENST00000343916 STRBPQ96SI9 672 aaKnown RBP22.64■■□□□ 1.21
COL9A3-201ENST00000343916 LRP5O75197 1615 aa22.63■■□□□ 1.21
COL9A3-201ENST00000343916 DHX16O60231 1041 aaKnown RBP22.63■■□□□ 1.21
COL9A3-201ENST00000343916 C17orf53Q8N3J3 647 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-201ENST00000343916 MYH14Q7Z406 1995 aaKnown RBP22.63■■□□□ 1.21
COL9A3-201ENST00000343916 BCAMP50895 628 aa22.63■■□□□ 1.21
COL9A3-201ENST00000343916 SNW1Q13573 536 aaKnown RBP22.63■■□□□ 1.21
COL9A3-201ENST00000343916 CHMP4CQ96CF2 233 aa22.63■■□□□ 1.21
COL9A3-201ENST00000343916 NEDD4P46934 1319 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 UBAP1LF5GYI3 381 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 KCNQ2O43526 872 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 CDCA7Q9BWT1 371 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-201ENST00000343916 PDCL3Q9H2J4 239 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 ANGEL1Q9UNK9 670 aaKnown RBP22.62■■□□□ 1.21
COL9A3-201ENST00000343916 FBXO18Q8NFZ0 1043 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 AK7Q96M32 723 aa22.62■■□□□ 1.21
COL9A3-201ENST00000343916 EPB41L4AQ9HCS5 686 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-201ENST00000343916 MBD4O95243 580 aa22.61■■□□□ 1.21
COL9A3-201ENST00000343916 ZNF165P49910 485 aa22.61■■□□□ 1.21
COL9A3-201ENST00000343916 CCDC144CPQ8IYA2 1237 aa22.61■■□□□ 1.21
COL9A3-201ENST00000343916 AIFM3Q96NN9 605 aa22.61■■□□□ 1.21
COL9A3-201ENST00000343916 ARMT1Q9H993 441 aa22.61■■□□□ 1.21
COL9A3-201ENST00000343916 A0A087WWV3 80 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 ZMYND15Q9H091 742 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 CLIC4Q9Y696 253 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 DDX60Q8IY21 1712 aaKnown RBP22.6■■□□□ 1.21
COL9A3-201ENST00000343916 NTSR2O95665 410 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 CCDC152Q4G0S7 254 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 ATL3Q6DD88 541 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 CCDC73Q6ZRK6 1079 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 ERCC4Q92889 916 aaPredicted RBP22.6■■□□□ 1.21
COL9A3-201ENST00000343916 PCDHA7Q9UN72 937 aa22.6■■□□□ 1.21
COL9A3-201ENST00000343916 KIF28PB7ZC32 967 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 SH2B2O14492 632 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-201ENST00000343916 CTDSPL2Q05D32 466 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 MAP3K12Q12852 859 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 MICU3Q86XE3 530 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 FSIP1Q8NA03 581 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 WDR19Q8NEZ3 1342 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 THRAP3Q9Y2W1 955 aaKnown RBP22.59■■□□□ 1.21
COL9A3-201ENST00000343916 MYL10Q9BUA6 226 aa22.59■■□□□ 1.21
COL9A3-201ENST00000343916 IQSEC3Q9UPP2 1182 aaPredicted RBP22.59■■□□□ 1.21
COL9A3-201ENST00000343916 PRKAB2O43741 272 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 IGHMBP2P38935 993 aaKnown RBP22.58■■□□□ 1.21
COL9A3-201ENST00000343916 METAP2P50579 478 aaKnown RBP eCLIP22.58■■□□□ 1.21
COL9A3-201ENST00000343916 KCNQ4P56696 695 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 PARP10Q53GL7 1025 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 IFNL3Q8IZI9 196 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 ENGASEQ8NFI3 743 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 KCNF1Q9H3M0 494 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 CDC27P30260 824 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 TERF1P54274 439 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 APOA5Q6Q788 366 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 PIBF1Q8WXW3 757 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 NAPBQ9H115 298 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 FAM13BQ9NYF5 915 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 RTEL1Q9NZ71 1219 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 TACC3Q9Y6A5 838 aa22.58■■□□□ 1.21
COL9A3-201ENST00000343916 UQCRHLA0A096LP55 91 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 UQCRHP07919 91 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 FAM160A1Q05DH4 1040 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 C11orf57Q6ZUT1 292 aaPredicted RBP22.57■■□□□ 1.2
COL9A3-201ENST00000343916 LINC00301Q8NCQ3 95 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 PHKBQ93100 1093 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 ZMYM6O95789 1325 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 A0A1B0GVL5 298 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 PATL2C9JE40 543 aaKnown RBP22.57■■□□□ 1.2
COL9A3-201ENST00000343916 KINO60870 393 aaKnown RBP22.57■■□□□ 1.2
COL9A3-201ENST00000343916 CHRNDQ07001 517 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 STK11IPQ8N1F8 1099 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 COL4A1P02462 1669 aa22.57■■□□□ 1.2
COL9A3-201ENST00000343916 ARAP2Q8WZ64 1704 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 WTIPA6NIX2 430 aaPredicted RBP22.56■■□□□ 1.2
COL9A3-201ENST00000343916 MYSM1Q5VVJ2 828 aa22.56■■□□□ 1.2
COL9A3-201ENST00000343916 IGDCC4Q8TDY8 1250 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms