RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ITGA6P23229 1130 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 CC2D1AQ6P1N0 951 aaPredicted RBP9.7□□□□□ -0.86
HMGB1-203ENST00000341423 FAM212AQ96EL1 285 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 ADPGKQ9BRR6 497 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 TSKSQ9UJT2 592 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 SLC8A2Q9UPR5 921 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 IFIT3O14879 490 aaKnown RBP9.7□□□□□ -0.86
HMGB1-203ENST00000341423 ANGEL2Q5VTE6 544 aaKnown RBP9.7□□□□□ -0.86
HMGB1-203ENST00000341423 EXOC8Q8IYI6 725 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 METTL13Q8N6R0 699 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 WDR97A6NE52 1622 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 TNS3Q68CZ2 1445 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 TYW5A2RUC4 315 aaKnown RBP9.69□□□□□ -0.86
HMGB1-203ENST00000341423 APOBRQ0VD83 1088 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 RCAN3Q9UKA8 241 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ZBTB21Q9ULJ3 1066 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 RAPGEF6Q8TEU7 1601 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ECE2O60344 883 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ASNSP08243 561 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 LBX1P52954 281 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 HAUS6Q7Z4H7 955 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 CCDC83Q8IWF9 413 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 C7orf31Q8N865 590 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ANO3Q9BYT9 981 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 MAP3K13O43283 966 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 STX6O43752 255 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 GNAT2P19087 354 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 CALML3P27482 149 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 CETN2P41208 172 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 GRAPQ13588 217 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 CFAP100Q494V2 611 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 UTP14CQ5TAP6 766 aaKnown RBP9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ARHGEF16Q5VV41 709 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 STYK1Q6J9G0 422 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 GRAPLQ8TC17 118 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-203ENST00000341423 MAGEC2Q9UBF1 373 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-203ENST00000341423 PHKG2P15735 406 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 KRT17Q04695 432 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 PUM3Q15397 648 aaKnown RBP9.69□□□□□ -0.86
HMGB1-203ENST00000341423 FAM117BQ6P1L5 589 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 KSR2Q6VAB6 950 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 JMYQ8N9B5 988 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 TCP11L1Q9NUJ3 509 aa9.69□□□□□ -0.86
HMGB1-203ENST00000341423 ATP7AQ04656 1500 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 EXOSC9Q06265 439 aaKnown RBP9.68□□□□□ -0.86
HMGB1-203ENST00000341423 CERKLQ49MI3 558 aaPredicted RBP9.68□□□□□ -0.86
HMGB1-203ENST00000341423 FCHSD1Q86WN1 690 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 SYNDIG1Q9H7V2 258 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 KDM5DQ9BY66 1539 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 TBCAO75347 108 aaKnown RBP9.68□□□□□ -0.86
HMGB1-203ENST00000341423 SUPT20HL2P0C7V6 817 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 SASH1O94885 1247 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 ABL1P00519 1130 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 FCER1AP12319 257 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 KIF1BPQ96EK5 621 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 MAP10Q9P2G4 905 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 ZBTB1Q9Y2K1 713 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 SLC12A7Q9Y666 1083 aa9.68□□□□□ -0.86
HMGB1-203ENST00000341423 MRVI1Q9Y6F6 885 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 ZFYP08048 801 aaPredicted RBP9.67□□□□□ -0.86
HMGB1-203ENST00000341423 C6orf222P0C671 652 aaPredicted RBP9.67□□□□□ -0.86
HMGB1-203ENST00000341423 RBM19Q9Y4C8 960 aaKnown RBP9.67□□□□□ -0.86
HMGB1-203ENST00000341423 SBNO1A3KN83 1393 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 ZNF804BA4D1E1 1349 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 DENND3A2RUS2 1198 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 CCDC173Q0VFZ6 552 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 CEP68Q76N32 757 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 ARHGEF25Q86VW2 580 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 CCDC148Q8NFR7 591 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 SYAP1Q96A49 352 aaPredicted RBP9.67□□□□□ -0.86
HMGB1-203ENST00000341423 GLT8D2Q9H1C3 349 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 MAP3K5Q99683 1374 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 NAP1L1P55209 391 aaKnown RBP9.67□□□□□ -0.86
HMGB1-203ENST00000341423 ANAPC15P60006 121 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 BFSP2Q13515 415 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 IFT74Q96LB3 600 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 CHPF2Q9P2E5 772 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 CRB1P82279 1406 aa9.67□□□□□ -0.86
HMGB1-203ENST00000341423 TMEM265A0A087WTH1 108 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 MAP3K7O43318 606 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 YARSP54577 528 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 NFX1Q12986 1120 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 FLIIQ13045 1269 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 PTGDRQ13258 359 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 ABCB5Q2M3G0 1257 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 DDX21Q9NR30 783 aaKnown RBP eCLIP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 NSD2O96028 1365 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 ABCC11Q96J66 1382 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 MSCO60682 206 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 XPAP23025 273 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 SSR1P43307 286 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 CES5AQ6NT32 575 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 TMEM199Q8N511 208 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 URGCPQ8TCY9 931 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 RRP36Q96EU6 259 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 JPH2Q9BR39 696 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 PKD2L1Q9P0L9 805 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 FNDC3AQ9Y2H6 1198 aaKnown RBP9.66□□□□□ -0.86
HMGB1-203ENST00000341423 GLTPD2A6NH11 291 aa9.66□□□□□ -0.86
HMGB1-203ENST00000341423 AMPD2Q01433 879 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms