RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MYCNP04198 464 aaPredicted RBP4.95□□□□□ -1.62
MCF2-201ENST00000338585 ZKSCAN1P17029 563 aaPredicted RBP4.95□□□□□ -1.62
MCF2-201ENST00000338585 ZSCAN25Q6NSZ9 544 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 STOX1Q6ZVD7 989 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 MIGA1Q8NAN2 632 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 MASTLQ96GX5 879 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 TTC14Q96N46 770 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 ARMT1Q9H993 441 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 RAI14Q9P0K7 980 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 GGA1Q9UJY5 639 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 DENND2AQ9ULE3 1009 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 ATP6V0A2Q9Y487 856 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 RPAP1Q9BWH6 1393 aaPredicted RBP4.95□□□□□ -1.62
MCF2-201ENST00000338585 LRRC37AA6NMS7 1700 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 LTBP1Q14766 1721 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 CACNA1SQ13698 1873 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 DUOX1Q9NRD9 1551 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 C6orf229H3BNL8 230 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 PRKAB2O43741 272 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 ZBTB7AO95365 584 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 CYP7A1P22680 504 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 ATP2B4P23634 1241 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 PRDX5P30044 214 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 AK2P54819 239 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 HAND2P61296 217 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 GRIK5Q16478 980 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 RNF20Q5VTR2 975 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 SP8Q8IXZ3 490 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 LCORLQ8N3X6 602 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 STRBPQ96SI9 672 aaKnown RBP4.95□□□□□ -1.62
MCF2-201ENST00000338585 ZSWIM6Q9HCJ5 1215 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 PODXL2Q9NZ53 605 aa4.95□□□□□ -1.62
MCF2-201ENST00000338585 MYH13Q9UKX3 1938 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 H0YIN7 160 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 RIMBP2O15034 1052 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 SEMA3EO15041 775 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 DTNBO60941 627 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 FGAP02671 866 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 HSP90AA1P07900 732 aaKnown RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 C15orf52Q6ZUT6 534 aaKnown RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 RUFY3Q7L099 469 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 ZGPATQ8N5A5 531 aaKnown RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 TDRD7Q8NHU6 1098 aaKnown RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 AIDAQ96BJ3 306 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 TMX3Q96JJ7 454 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 TM6SF1Q9BZW5 370 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 SLX4Q8IY92 1834 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 LARGE1O95461 756 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 APPP05067 770 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 ALDH1B1P30837 517 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 DDIT3P35638 169 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 MECOMQ03112 1051 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 TSGA10IPQ3SY00 556 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 ZNF804AQ7Z570 1209 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 CCDC125Q86Z20 511 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 SPNS2Q8IVW8 549 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 EPB41L4AQ9HCS5 686 aaPredicted RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 CD209Q9NNX6 404 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 PDRG1Q9NUG6 133 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 ATF5Q9Y2D1 282 aaPredicted RBP4.94□□□□□ -1.62
MCF2-201ENST00000338585 CYP46A1Q9Y6A2 500 aa4.94□□□□□ -1.62
MCF2-201ENST00000338585 PDS5AQ29RF7 1337 aaKnown RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 E7EWF7 191 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 RPS6KB1P23443 525 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 DYNLL1P63167 89 aaKnown RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 R3HDM1Q15032 1099 aaKnown RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 STYK1Q6J9G0 422 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 NAA16Q6N069 864 aaPredicted RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 BLOC1S2Q6QNY1 142 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 DPP8Q6V1X1 898 aaPredicted RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 TMC4Q7Z404 712 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 MPNDQ8N594 471 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 NKX2-3Q8TAU0 364 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 NSUN4Q96CB9 384 aaKnown RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 NEK1Q96PY6 1258 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 LRRC2Q9BYS8 371 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 NBPF3Q9H094 633 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 C10orf71Q711Q0 1435 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 GSG1L2A8MUP6 293 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 SMIM22K7EJ46 135 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 IL1R1P14778 569 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 PSMA5P28066 241 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 PLCB2Q00722 1185 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 NBR1Q14596 966 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 DIXDC1Q155Q3 683 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 DOK7Q18PE1 504 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 CHST3Q7LGC8 479 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 SDR42E1Q8WUS8 393 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 UPF1Q92900 1129 aaKnown RBP eCLIP4.93□□□□□ -1.62
MCF2-201ENST00000338585 RIOK1Q9BRS2 568 aaKnown RBP4.93□□□□□ -1.62
MCF2-201ENST00000338585 SLC4A4Q9Y6R1 1079 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 CHD4Q14839 1912 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 LAMA4Q16363 1823 aa4.93□□□□□ -1.62
MCF2-201ENST00000338585 MAGEB6P1A0A0J9YX57 407 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 PSDA5PKW4 1024 aaPredicted RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 MCM2P49736 904 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 ST3GAL1Q11201 340 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 TOB2Q14106 344 aaPredicted RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 KRT32Q14532 448 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 IMMTQ16891 758 aaKnown RBP4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms