RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 TRIML1Q8N9V2 468 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC26Q8TAB7 109 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 LRRC45Q96CN5 670 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 LMBRD1Q9NUN5 540 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 DHX37Q8IY37 1157 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 MRFAP1L1Q96HT8 127 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC113Q9H0I3 377 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 DEXIO95424 95 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 NOP2P46087 812 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 MED4Q9NPJ6 270 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 FRMPD1Q5SYB0 1578 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 OTUD6BQ8N6M0 293 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 DCAF5Q96JK2 942 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 FAM83GA6ND36 823 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 C6orf50Q9HD87 102 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 RSRC1Q96IZ7 334 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 UBXN1Q04323 297 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 ZC3H13Q5T200 1668 aaKnown RBP11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC174Q6PII3 467 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 AFAP1L1Q8TED9 768 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 IFNKQ9P0W0 207 aa11.61□□□□□ -0.55
CCDC88A-202ENST00000336838 TMCO5BA8MYB1 307 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 ATP2A2P16615 1042 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 CTNNA2P26232 953 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 NT5C2P49902 561 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 IFT20Q8IY31 132 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 SAMD15Q9P1V8 674 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 ANGEL1Q9UNK9 670 aaKnown RBP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 SPDYE4A6NLX3 237 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 CCDC84Q86UT8 332 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 SIRT1Q96EB6 747 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 CARD14Q9BXL6 1004 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 GUCY1B3Q02153 619 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 IQSEC3Q9UPP2 1182 aaPredicted RBP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 SYNRGQ9UMZ2 1314 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 MTMR3Q13615 1198 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 PLCD4Q9BRC7 762 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 MATR3P43243 847 aaKnown RBP eCLIP11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 RUFY4Q6ZNE9 571 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 NYXQ9GZU5 481 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 PCDH11XQ9BZA7 1347 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 PCDH11YQ9BZA8 1340 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 MSANTD4Q8NCY6 345 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 CSRNP2Q9H175 543 aa11.6□□□□□ -0.55
CCDC88A-202ENST00000336838 LMOD1P29536 600 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 GBP1P32455 592 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 SSR1P43307 286 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 RPGRQ92834 1020 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ZHX1Q9UKY1 873 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 LRRIQ1Q96JM4 1722 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ZFYVE16Q7Z3T8 1539 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 KRT13P13646 458 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 DDX46Q7L014 1031 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 PLCB1Q9NQ66 1216 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 A0A1B0GUA9 196 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 MTUS1Q9ULD2 1270 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ALDH3A1P30838 453 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ANO1Q5XXA6 986 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 DSCC1Q9BVC3 393 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 MYO1AQ9UBC5 1043 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ACTN4O43707 911 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 DNAJC21Q5F1R6 531 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 FBXO3Q9UK99 471 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 RBM26Q5T8P6 1007 aaKnown RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 MAGEF1Q9HAY2 307 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 TSPY3P0CV98 308 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 TSPY8P0CW00 308 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 NLRP12P59046 1061 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 SKAP1Q86WV1 359 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 LEO1Q8WVC0 666 aaPredicted RBP11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 CPLX3Q8WVH0 158 aa11.59□□□□□ -0.55
CCDC88A-202ENST00000336838 ERVK-7P63135 1459 aa11.58□□□□□ -0.55
CCDC88A-202ENST00000336838 DTHD1Q6ZMT9 781 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 RBSNQ9H1K0 784 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 MPHOSPH10O00566 681 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 EVCP57679 992 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 TSNARE1Q96NA8 513 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 IQCGQ9H095 443 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 OSBPL3Q9H4L5 887 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 DDX21Q9NR30 783 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 CAMSAP1Q5T5Y3 1602 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 GIGYF1O75420 1035 aaPredicted RBP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 SYCP3Q8IZU3 236 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 NECAB1Q8N987 351 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 ASIC1P78348 528 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 SYCE1Q8N0S2 351 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 RSPH14Q9UHP6 348 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 CDC42BPGQ6DT37 1551 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 PLEKHG1Q9ULL1 1385 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 PTCH1Q13635 1447 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 KDRP35968 1356 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 A0A1W2PRG0 241 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 RBM5P52756 815 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 MAP3K9P80192 1104 aa11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 RRP36Q96EU6 259 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 BCCIPQ9P287 314 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC88A-202ENST00000336838 CPSF1Q10570 1443 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms